HEAT STRESS GENES DATABASE
Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
| Sequence Id | TRINITY_DN19469_c0_g1_i1 |
| Heat Stress Genes | A5 |
| Ensembl Plants | |
|---|---|
| New Transcript Id | TraesCS7B02G311400.2 |
| Functional Annotation | |
| Gene ontology | XP_020200706.1 |
| Protein family Detail | |
| Type | Domain |
| Transcripts Per Million | |
| TPM | 3.36 |
| Fragments Per Kilobase of transcript per Million mapped reads | |
| FPKM | 2.32 |
| Sequence | AGCGTGCCAAACAGGTCTAGGGTCCAAAACAGACTGGGAATACAAGTTAAGAGTGCCAATTTTTGG GATTCAAAATTCAAGGTTTGATTTAGCTTTCTTTAAGGTTTGTTTTGGACTTTTTCCTAATAAATA TAACAATATATACAGTTACACACACGTCCCATGCTGTGCGTAATCACACACCCATTAATTGATGTC ATCCTGATTACAACAACAGCTTTCCTGTATGTCTCACTTCCTCGAAATTGGTAGCACTCGAAGAAA AATTCAGAGTTTCAGCTGTTCCGTGTCATCCTTCTCCCCCCTTTCCGTTTGCTCCTTGTCCATGGA AGGATCCCTCGGGCCAGAGCTCGCGTCTCCCGGCCTCTCCGTCAAAAACTGTTCCCAGAAGTTGTC ATTCGCCTTGACAGGAGCTGCCGGCTCGGCGGCCACTCGCGTATCCTCTCGTGGCGTCAAAGCTTC CGCTGTGCCGGCATCGACTGATGCCTTCTGGTTAACGCCCATGGCGGCTGCGGTGGCCTCCGGTGG GTTGTCGCTTCCCTCATCGACGGTGGTGCTCCCGTCTGCATTGGAGGCTTGGCCTCTGTCGACATC CATCGAGCACGACGCTAGAGTTAGGCTCAGATGGCACGGCGACAGGCCTTCGTCGTTTACAGCCGG TGTGAAGAACGAGCTCTTGGAGGGGCAGATGGACGTCCCGGTATCGGAGAGCTCCATCATCTGTGG TACCAGAGGAAGGCATCCTGTCCCCATTCCTTCATGCCCTGGAGGATGCCTGCCATGCGGGCTACA GTTGTCTTCGTGCGAGCTTTGGGTGCTCAGGGTGACGAGGTTGCTCTCTGCCGCCGCGGAGCAGAG CCCCAACTTGAGCTTATCGGAGAAGTGCTGGTTCAGAAGGTTGCCCATTTCTTGCCGGGAAGTGGG GCTATGGTCATCGCAGAAACTAGCCGTTTCCGTGGCCTCGACGGCATAGTCTAACCCAGATAGCCT TCTCTTCTTGTGCAAAGCGTCTGCGAACATCGAG GATGCCTCTGCCATCTTGACAAGCTTACCG ACAAAGTGAGGGTTCTTGCTGGCCTGCTGCAGGAAGGCGATCATCTTGCCTTGCCGCTGCTCCATG TCGACCGCTCGTCGCTCCAGGGCTTCAATCTGGAACATGGTTCCAGACTCCTGCTGCTTGGACTTC CAGAGCTCGGCCTGTAGGTTTGCTTTCTCTCGTGCAAGCCGGTCGATCTCGTCTTCGAAGAATGAA CGCTCGTTATCAGGCAGCGCACCTGGTTGATGACTGTGGCTGTGGATAGGCTTCCGCCTGTAGATG TTCTTCAGCAGGTGTTTCTGCCCCTTGACAAAGTACTCGTTACCGAATTCCCATCGCTCTGGATCT ATTTTACGGAATCCGTAGGTGTTGAGCTGCCGGATGAAGCTGGAGAAATTGCTGTGCTTGAAGTAG GCAGGCAGCAGCCGCGCGGCGAACTCGGGCGAGTTCCAGACCACGAAGCTCGTGTCCGACGCGTCG CTCCACGACACCACCGCGTCCGTCGACGGGTCGTCCACCATCTCGT |
| Metabolic Pathways | |
| Description | loc_os02g29340.1:624.0)no description available & (at4g13980:311.0) member of Heat Stress Transcription Factor (Hsf) family AT-HSFA5 |
| Function | DNA binding, sequence-specific DNA binding transcription factor activity |
| Involve In | regulation of transcription, DNA-dependent |
| Located In | nucleus |
| Expressed In | 22 plant structures |
| Expressed_During | 11 growth stages |
| Domains/Interpro | Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232) |
| Best Arabiophosystemics | heat shock factor 1 (TAIR:AT4G17750.1) Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12 Bacteria - 1396 Metazoa - 17338 Fungi - 3422 Plants - 5037 Viruses - 0 Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 622.0) & (original description: len=1562 path=[0:0-1561]) T |