Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Sequence Id | TRINITY_DN24657_c0_g1_i2 |
Heat Stress Genes | B3 |
Ensembl Plants | |
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New Transcript Id | TraesCS7D02G367700.1 |
Functional Annotation | |
Gene ontology | BAJ96942.1 |
Protein family Detail | |
Type | Domain |
Transcripts Per Million | |
TPM | 2.16 |
Fragments Per Kilobase of transcript per Million mapped reads | |
FPKM | 1.49 |
Sequence | CCCGGACCGAAAGCAACCGCCGCTAGCGCTCGCGACGGCGTGACGACCCACCTCTGTCTCTCGCTC CGTCCTCCTTTATATCCCCCGCGGCTGCAGGGGAAGGCGAGGCTAGCGGAGGTAGGAGAAGAGAGG AGGGCCGTCGCGGCAACCACAGACAAACCCAGCCGAAAGGCGCACGCACCACCGTGCCGGTTACAT GGGAGGAGGCCGCGGTCTGGTCACCGGGTTCTACGTCTGGGGCTGGGAGTTCCTCACCGCGCTGCT CCTCTTCTCCGCCGCCGTCTCCTGCTAGCCACCTCTCCTTCTCGATCGATCCTTGACTGATTATAC TCCAATCATATATACATAGATACATACACCAGCTTATTATTAGGTAGAGAGACATCTGTTAGGTGA TTAAGCCGGCGAGGATGGCCGGGGCGGCGGCGCAGCAGCAGCAGAAGGGTGGTGGTGGTGGTGTGG CGAGGGCCGGCGGCGGAGGGCCGGCGCCGTTCCTGACGAAGACGCACCAGATGGTGGAGGAGCGCG GGACGGACGAGGTGATCTCGTGGAGCGAGCACGGGCGGTCGTTCGTGGTGTGGAAGCCCGTGGAGC TGGCCCGCGACCTCCTCCCGCTCCACTTCAAGCACTGCAACTTCTCCTCCTTCGTCCGCCAGCTCA ACACCTACGTACGTACCACCACTCTCCTCCAATCCAAGCACACGCTCTCTCTGCAATACTCTTACC TCTGCCTTCACTAAATTATTAATCACTCCCGTCCGCACTGATCAACGACTTACGACTTGAGTAGAG TATATGCGTTCTTGTTTGATTTTTATTATTATTTGGAGGAAAAAAGAAGCATCCCGTTCGTCCTCT TAGAGTGATTAGAGATTAGAGATGCAAGTGATGGATCCATATCCTAGTAGCTTGTGCTAGAAGAGA TTGTTGTGATCAGATACGGTCGGCAGCTTCCAGAGGAGACACGCCCCTGACGTGTCCACGGGAAGC TCTCGGCCCTTCTAGCTTTTGTTCTCCACACCAC ATATTAGTGCGTGCTCACGCTACGTAGCAT ACTACTAGTACTACAGTGGTACAGATTGAGCACAGCCGGCCGGTGGATTCTTTTCCGGCGAGGAAT TAAGCGTGGTCGCTACTAGTGGTACTAGTAAGAACAATTGTCACGAGACCGAGGTAAGGCACGTGG CATGCACGTAAGGATGTTTCTGGTTGGGACTTCATTTTGCTGTCTCGGCCGTACACGTCCTAGAAT GGATCCACTACTACACATACGGCTAGCCAGCGCGCATGTTCCACTGTTCGCGGTGGGGTCTCCATT CAAAAGCGCGTGTGGACTTTGGGCAAAGCGAACGGGTGAAACATCTCGAGCTAGCTAATTACATAC TCATGTTTGTTGGACGGACAAATCTGGATTTACCGGCTAGTAGTGCAGAAGAAGTACATGGAAGAA AGTGACACATAAAAAAAGGCTACTAGTACCTTATTTTTCCTAGTAGGCTGTTGGTTGGAACAATAT GGAAGAAAGATGACGCCCAAAGAGCCTTTCTGGTCGACCTAAAACGTAGAAAACGAGCAACGCGTT TCACTTGTCGTGTCATGCAACGATATGTATATAAAAAGAGCCCCTTTGTGCTGACCATTGACAGGG TAGGTGACAACAAAACTAGCTACGTGCGCGCGTGCCGTCTGCGAGTCAATAAACCATTTCAGTTTC CCACGCTTGAGCGTACACGCTTGGACATTAACGCAAAAAGAAAAAGGATAGTAGCTGCTTGGAAAA TAGCGAGAAAAGACAGTGCAACTTAGAGGGGCGGTGAAAAAACGTGACTAGTGCTGAGTGGTGATG TCGCCTTCGCCTTTTCCTTTTGACAAAATGTGGCCGGTTATCTGGACGTGACGGTCACCGATACCA TATAAGTGTGCAAATAATCGACAGGACGGGTGGACGGACGCGGCACCACGTTAGAGATGGATGCCA ACGGGTTCCATGAAAGCAAATTTAGTGCTTGCCCATCACTGTTTAACACCCCACGAGGTTGAGGTT TTAA TTTAGTGCGTCATCGGTCCTCATTTGTGATTACGCGGGGACTAGAAGCTTGGTGGAACTT TCAACCGGATATCTCTGTGTCCTCTTCTGGAAACCACTCTAGGAAATAGAGCTTCTTTTATTTATT TTTACGAAAAGAACTCAGATCTATTATAAGGTTAAAAAATATAGAAAAAAAAGGCACACACACAAA CATGCAGGATAATTAAAATTCATGACATACACTTATACAATGCACATTCATCACATACACATCGAG ATATATTTATCTTTCCGTAGTAAAAAAAAAATCTTCAATGAAAAGTGTCTACTAGAAAGTCGTCGA AAGAATGAATTCTTGAAAAAAAAATCAAATAAAAGAGGCCCGTTAACTATCCATAATTATGTTTTT AATGTGCACATCGGAAAAGGAGGTCGCTAGCAT |
Metabolic Pathways | |
Description | loc_os09g28354.1:115.0)no description available & (at2g41690:95.9) member of Heat Stress Transcription Factor (Hsf) family heat shock transcription factor B3 (HSFB3) |
Function | DNA binding, sequence-specific DNA binding transcription factor activity |
Involve In | response to cadmium ion |
Located In | nucleus |
Expressed In | inflorescence meristem, leaf whorl, flower, cultured cell |
Expressed_During | 4 anthesis, petal differentiation and expansion stage |
Domains/Interpro | Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232) |
Best Arabiophosystemics | heat shock transcription factor B2A (TAIR:AT5G62020.1) Has 2046 Blast hits to 2034 proteins in 225 species: Archae - 0 Bacteria - 0 Metazoa - 329 Fungi - 465 Plants - 775 Viruses - 0 Other Eukaryotes - 477 (source: NCBI BLink). & (reliability: 188.8) & (original description: len=2471 path=[0:0-668 2:669-2058 4:2059-2122 7:2123-2184 8:2185-2334 10:2335-2366 12:2367-2470]) |