Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Sequence Id | TRINITY_DN24657_c0_g1_i3 |
Heat Stress Genes | B1 |
Ensembl Plants | |
---|---|
New Transcript Id | TraesCS7B02G406000.1 |
Functional Annotation | |
Gene ontology | XP_020177659.1 |
Protein family Detail | |
Type | Domain |
Transcripts Per Million | |
TPM | 5.3 |
Fragments Per Kilobase of transcript per Million mapped reads | |
FPKM | 3.66 |
Sequence | CCCGGACCGAAAGCAACCGCCGCTAGCGCTCGCGACGGCGTGACGACCCACCTCTGTCTCTCGCTC CGTCCTCCTTTATATCCCCCGCGGCTGCAGGGGAAGGCGAGGCTAGCGGAGGTAGGAGAAGAGAGG AGGGCCGTCGCGGCAACCACAGACAAACCCAGCCGAAAGGCGCACGCACCACCGTGCCGGTTACAT GGGAGGAGGCCGCGGTCTGGTCACCGGGTTCTACGTCTGGGGCTGGGAGTTCCTCACCGCGCTGCT CCTCTTCTCCGCCGCCGTCTCCTGCTAGCCACCTCTCCTTCTCGATCGATCCTTGACTGATTATAC TCCAATCATATATACATAGATACATACACCAGCTTATTATTAGGTAGAGAGACATCTGTTAGGTGA TTAAGCCGGCGAGGATGGCCGGGGCGGCGGCGCAGCAGCAGCAGAAGGGTGGTGGTGGTGGTGTGG CGAGGGCCGGCGGCGGAGGGCCGGCGCCGTTCCTGACGAAGACGCACCAGATGGTGGAGGAGCGCG GGACGGACGAGGTGATCTCGTGGAGCGAGCACGGGCGGTCGTTCGTGGTGTGGAAGCCCGTGGAGC TGGCCCGCGACCTCCTCCCGCTCCACTTCAAGCACTGCAACTTCTCCTCCTTCGTCCGCCAGCTCA ACACCTACGGTTTTCGGAAGGTGGTGCCGGACCGGTGGGAGTTCGCAAATGAGAACTTCCGGCGAG GCGAGCAAAGCCTCCTCTCCGGCATCCGTCGCCGCAAGGCTACGGCGACGACGACTCCCCAGTCCT CTAAAACCTGCGGAACCGGCGTAAACGTCGCGTTCCCTCCGCCGCTGCCCGCTCTGCCTCCCGCGT CCGCCAGCACGTCCGGCACCGGCAACGACCACAGCACCTCCTCGGCGTCATCGCCGACGCGCCCGG ATCTCAGCAGCGAGAACGAGCAGCTCAGGAAGGACAACCATGCCCTGGCAGCGGAGCTGGCCCTGG CGCGGAGGCACTGCGAGGAGCTCCTGGGCTTCCT CTCCCGCTTCCTGGACGTCAGGCAGCTTGA CCTGCGTCTGCTGATGGACGAAGACATGCAAGGCGGGGGTGGGGCCGGCGGCGCCCGCTCGGCGGA CCAAGAGCACTGCTGCGAGAAGAAGGTGAAGCTGTTCGGCGTGATCCTCAAGGACGCGTCGGCGAG GAAGAGGGGCCGGTGCGACGAGGCGGCGGCCAGCGAGCGGTCGATGAAGATGGCGAGGATCGGGGA GCCGTGGGTCGGCGTGCCGTCATCCTGC |
Metabolic Pathways | |
Description | loc_os09g28354.1:342.0)no description available & (at4g36990:164.0) encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. heat shock factor 4 (HSF4) |
Function | transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity |
Involve In | response to cyclopentenone, response to heat |
Located In | nucleus |
Expressed In | - |
Expressed_During | - |
Domains/Interpro | Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232) |
Best Arabiophosystemics | heat shock transcription factor B2A (TAIR:AT5G62020.1) Has 2101 Blast hits to 2087 proteins in 226 species: Archae - 0 Bacteria - 2 Metazoa - 340 Fungi - 475 Plants - 774 Viruses - 0 Other Eukaryotes - 510 (source: NCBI BLink). & (reliability: 328.0) & (original description: len=1280 path=[0:0-668 3:669-670 6:671-1279]) |