HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)



Sequence IdTRINITY_DN24657_c0_g1_i3
Heat Stress GenesB1
Ensembl Plants
New Transcript IdTraesCS7B02G406000.1
Functional Annotation
Gene ontologyXP_020177659.1
Protein family Detail
TypeDomain
Transcripts Per Million
TPM5.3
Fragments Per Kilobase of transcript per Million mapped reads
FPKM3.66
SequenceCCCGGACCGAAAGCAACCGCCGCTAGCGCTCGCGACGGCGTGACGACCCACCTCTGTCTCTCGCTC
CGTCCTCCTTTATATCCCCCGCGGCTGCAGGGGAAGGCGAGGCTAGCGGAGGTAGGAGAAGAGAGG
AGGGCCGTCGCGGCAACCACAGACAAACCCAGCCGAAAGGCGCACGCACCACCGTGCCGGTTACAT
GGGAGGAGGCCGCGGTCTGGTCACCGGGTTCTACGTCTGGGGCTGGGAGTTCCTCACCGCGCTGCT
CCTCTTCTCCGCCGCCGTCTCCTGCTAGCCACCTCTCCTTCTCGATCGATCCTTGACTGATTATAC
TCCAATCATATATACATAGATACATACACCAGCTTATTATTAGGTAGAGAGACATCTGTTAGGTGA
TTAAGCCGGCGAGGATGGCCGGGGCGGCGGCGCAGCAGCAGCAGAAGGGTGGTGGTGGTGGTGTGG
CGAGGGCCGGCGGCGGAGGGCCGGCGCCGTTCCTGACGAAGACGCACCAGATGGTGGAGGAGCGCG
GGACGGACGAGGTGATCTCGTGGAGCGAGCACGGGCGGTCGTTCGTGGTGTGGAAGCCCGTGGAGC
TGGCCCGCGACCTCCTCCCGCTCCACTTCAAGCACTGCAACTTCTCCTCCTTCGTCCGCCAGCTCA
ACACCTACGGTTTTCGGAAGGTGGTGCCGGACCGGTGGGAGTTCGCAAATGAGAACTTCCGGCGAG
GCGAGCAAAGCCTCCTCTCCGGCATCCGTCGCCGCAAGGCTACGGCGACGACGACTCCCCAGTCCT
CTAAAACCTGCGGAACCGGCGTAAACGTCGCGTTCCCTCCGCCGCTGCCCGCTCTGCCTCCCGCGT
CCGCCAGCACGTCCGGCACCGGCAACGACCACAGCACCTCCTCGGCGTCATCGCCGACGCGCCCGG
ATCTCAGCAGCGAGAACGAGCAGCTCAGGAAGGACAACCATGCCCTGGCAGCGGAGCTGGCCCTGG
CGCGGAGGCACTGCGAGGAGCTCCTGGGCTTCCT CTCCCGCTTCCTGGACGTCAGGCAGCTTGA
CCTGCGTCTGCTGATGGACGAAGACATGCAAGGCGGGGGTGGGGCCGGCGGCGCCCGCTCGGCGGA
CCAAGAGCACTGCTGCGAGAAGAAGGTGAAGCTGTTCGGCGTGATCCTCAAGGACGCGTCGGCGAG
GAAGAGGGGCCGGTGCGACGAGGCGGCGGCCAGCGAGCGGTCGATGAAGATGGCGAGGATCGGGGA
GCCGTGGGTCGGCGTGCCGTCATCCTGC
Metabolic Pathways
Descriptionloc_os09g28354.1:342.0)no description available & (at4g36990:164.0) encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. heat shock factor 4 (HSF4)
Function transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity
Involve In response to cyclopentenone, response to heat
Located In nucleus
Expressed In-
Expressed_During-
Domains/Interpro Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232)
Best Arabiophosystemics heat shock transcription factor B2A (TAIR:AT5G62020.1) Has 2101 Blast hits to 2087 proteins in 226 species: Archae - 0 Bacteria - 2 Metazoa - 340 Fungi - 475 Plants - 774 Viruses - 0 Other Eukaryotes - 510 (source: NCBI BLink). & (reliability: 328.0) & (original description: len=1280 path=[0:0-668 3:669-670 6:671-1279])