HEAT STRESS GENES DATABASE
Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
| Sequence Id | TRINITY_DN4851_c0_g1_i14 |
| Heat Stress Genes | A2c |
| Ensembl Plants | |
|---|---|
| New Transcript Id | TraesCS5D02G445100.1 |
| Functional Annotation | |
| Gene ontology | EMS45094.1 |
| Protein family Detail | |
| Type | - |
| Transcripts Per Million | |
| TPM | 2.29 |
| Fragments Per Kilobase of transcript per Million mapped reads | |
| FPKM | 1.58 |
| Sequence | CCGATCTTGCAGTGACAGTTGGCATGAGAAAAAGATAATTATGTTACATTCTGACTGAACTGCTTG GTCGCCTTTGTGGTTCAGGGCTGAATGTATGTTGGCATATGATTGATAAAGAACTGCCTATCAGTG CACATTGCCTAAAGGGTGATTGTGCTTAGCTTTGAGTTCAATAATAAGAACACTAATCAATACCTT GCAAAGGTTATCAACATATATTATCTCAATAACAGAGGTTCCAGCATACACTACCAATCATCACAC AGGACACAGGCCCTAAAAGTAAGGTAAATTGGCAAATGGACAGCAGCAGGAGAAATGGGTAAACCC ACACCCAGATGCCAACGGCTGACTACAGACCAGACTTTCACAACAAAACCACCCAACGAGTATATA CAGTAACACACTTCCACAGCTACTGCTGCTGAACATCAGCTCAGGACAACCGAATGTCGACGACCT GGACCATCTTCTTCAGAGTTGCAAGTTTAGGTACCCATCCAATACACGTCATGGGTCTCCATCAAG CGACGCAGCAATTAGTCTTCAGCTTCTACTCTCTACCCAGAGGTGTCGTCAACACGGTCCAATCTC CGGTATGGAACACCTCAGATAGCCAGTCATGTTGCCACCAATCAACTAAATCAGATTTTTCAAGAT GATCTGCAATAGTAGTACTGAAGAAGCAATGTTTGTTGGTTGAAGTGAGAACCACTGTGAACAAGA ACTCTACTGCGGGCTAGTAGAACTCAGATACCCCAACTGCTGAGCCAGTTCGTCGATATCTTCAGG TCTCCTTCCCTCCAACTCTGACAGCCCAGACCCGTCTCCGTCTCCAAAATCATCAGAAAATAGCTC TGCCCAGAAATCGTTGTTGATATCCAACTGCCCATTAGCTTCATCCTTCTTCTCCTCGTCTGTTTT GCCCTGCCCAAGCTCCTGAATGTTCTGCGCTAAATTCTCCATCCCATTCATTCCAGGTTCACTGAG GACACCAGAATCAAACAGGAACTGTGAATCAAGT TGCTCGCTCTGACTTGTTGTTGCCCCGGGA CCATAAAATGGAGCATTGTCTATAGGCCGCCTTCTTTTCTTCGAGATGGCATCCTCAAGCTCCTTC CTCTTATCTTGCTTCTGGATTAGTTGTTGGAAGAAGTGCGGGTTACGCATTGCTCTTGCCAAGAAC CCCATCATCTGGGCCTGTCTCTGTTCAGCAGCTCGTAGCCTGCCTTCCATGGCTTGCACGTTATCC TTAGTAGCTTGCTGCTCCTGCCTTAGCTTCACTACCTCTGTAATCAAGAGGTTCTTGTCGCGCTTG AGCCTGTCAATCTCTTCCTCAAATCCAAACTCACCAACCTCCAGGCAAGATGTGAGGGCCTGCTGC TGTGATGAGGGCGCATTGGATGGCGGCTTCCTTCTCTTGATCGCCTTGAGAAGATGCCTCTGACCC CTAAGGAAACCTTCATTTGCAAACTCCCATCTGTCAGGATCAACCTTTCTGAATCCCTGCAGATTG CAAGAGGTAAGTAACGACCACGGTTAGGCCATGGACAGAACTCACAACAGTCACAAGGCAACATGA TTGACCAGCAATAGCTATGCTGTAACTTCTAGATTATAGCTTGATCATCAGTACACTATATCATCA GTAGAGTCTTCTAGAACAAAACAATCTGGTTCCTGTACTTCATCCAGTATCTTGTTCCATCTAGCT ACAATAAGAAGTTCAAGGAATGATGTCAGGATGATACAATTTTTTTCTGGAGAGTTCATCTCCATG CCTCACCGTCAGATATGAAGCTCATGGCAGGACACATTGCTTGAAGAATAAGCACATTCAGAAGAT TTCCACACACATAATCAGTACAATGTTAAAAGTTTTAGAGCTAGGATGTATACTTGCATTAAAGCT GCAAAGCCCTTTTACACTAGTGGTTGGCTTATTTTACACTTATAATTAAATAACCTCAAGTACAAT ACAACACACACAGAAGCAGTCGTAGTTTATTTTATTTAGACTTCCTAAATCCTAGTTTATCTAGTT TGGA ATTATCAGTTATGACTAGTTCAGTTATCAGAGCATTACCCTGGACACCCACAGATCTGGT TCTCATATCACAATCTGAAGAGCACAATGCTTATCTGAAATGCTGCTGATTTACCAAGACTAACTA CACAAGAATATGGTGCCGTCTTCTTCTTAACACAAGACAGAAAAGTAGCAAGATTGATTGATTACT TAATTAGCTTAAACGATGATTCTACCTATCCATCCCCTTATTACCAAATCAAATCAGCAACATGAG TAAAAGAAATTAGCAAAAGACTAATCAGCACCAAGAGACAGGAGGCAAGAGGGTGGTGAGTGGTGA CTCACATAGGTGTTGAGAGATC |
| Metabolic Pathways | |
| Description | loc_os10g28340.3:366.0)no description available & (at3g22830:204.0) member of Heat Stress Transcription Factor (Hsf) family heat shock transcription factor A6B (HSFA6B) |
| Function | DNA binding, sequence-specific DNA binding transcription factor activity |
| Involve In | regulation of transcription, DNA-dependent |
| Located In | nucleus |
| Expressed In | root |
| Expressed_During | - |
| Domains/Interpro | Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232) |
| Best Arabiophosystemics | heat shock transcription factor A2 (TAIR:AT2G26150.1) Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0 Bacteria - 17 Metazoa - 509 Fungi - 485 Plants - 797 Viruses - 4 Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 408.0) & (original description: len=2394 path=[1:0-345 2:346-378 4:379-483 5:484-532 8:533-645 14:646-2393]) T |