HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

Home

Sequence Id TRINITY_DN7294_c1_g1_i2
Heat Stress Genes A4b
Ensembl Plants
New Transcript Id TraesCS7B02G272500.1
Functional Annotation
Gene ontology XP_020165982.1
Protein family Detail
Type -
Transcripts Per Million
TPM 4.15
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 2.86
Sequence CCAACCCCCAACCAACCAACCAAACCCAACCGAAGAAGCCGAGCCGAACCCCACTCCGCCGATCAG
CCGCTATGGCTATGCGCTGAGGCCGAATCGCCGCAGCCCGAGGAGGAGAAGGGGGTGGAGGGGATG
GAGGGGAGTGGCGGGTCCGCGTCGCTGCCGCCGTTCCTCACCAAGACGTACGAGATGGTGGACGAG
CCGGCCACGGACGCGGTGGTGGCGTGGACGCCGTCCGGCACCAGCTTCGTCGTCTTGAGCCAGGCC
GACTTCTGCCGGGATCTTCTCCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAG
CTCAACACCTATGGCTTCCGCAAGGTGGATCCGGACCGGTGGGAGTTCGCCCACGGCTCCTTCCTC
CGGGGCCAGACGCACCTCCTGCGCAACATCGTCCGCCGTG
Metabolic Pathways
Description loc_os01g54550.1:176.0)no description available & (at4g17750:153.0) native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation and is heat-shock inducible heat shock factor 1 (HSF1)
Function -
Involve In -
Located In -
Expressed In -
Expressed_During -
Domains/Interpro Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232)
Best Arabiophosystemics heat shock transcription factor A1D (TAIR:AT1G32330.1) Has 101009 Blast hits to 12266 proteins in 352 species: Archae - 60 Bacteria - 127 Metazoa - 1552 Fungi - 3291 Plants - 964 Viruses - 2 Other Eukaryotes - 95013 (source: NCBI BLink). & (reliability: 292.0) & (original description: len=436 path=[0:0-157 2:158-183 4:184-184 5:185-304 7:305-316 8:317-340 9:341-435])

Ensembl Plants
Sequence Id	TRINITY_DN7294_c1_g1_i2
Heat Stress Genes	A4b
New Transcript Id	TraesCS7B02G272500.1
Functional Annotation
Gene ontology	XP_020165982.1
Protein family Detail
Type	-
Transcripts Per Million
TPM	4.15
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	2.86
Sequence	CCAACCCCCAACCAACCAACCAAACCCAACCGAAGAAGCCGAGCCGAACCCCACTCCGCCGATCAG CCGCTATGGCTATGCGCTGAGGCCGAATCGCCGCAGCCCGAGGAGGAGAAGGGGGTGGAGGGGATG GAGGGGAGTGGCGGGTCCGCGTCGCTGCCGCCGTTCCTCACCAAGACGTACGAGATGGTGGACGAG CCGGCCACGGACGCGGTGGTGGCGTGGACGCCGTCCGGCACCAGCTTCGTCGTCTTGAGCCAGGCC GACTTCTGCCGGGATCTTCTCCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAG CTCAACACCTATGGCTTCCGCAAGGTGGATCCGGACCGGTGGGAGTTCGCCCACGGCTCCTTCCTC CGGGGCCAGACGCACCTCCTGCGCAACATCGTCCGCCGTG
Metabolic Pathways
Description	loc_os01g54550.1:176.0)no description available & (at4g17750:153.0) native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation and is heat-shock inducible heat shock factor 1 (HSF1)
Function	-
Involve In	-
Located In	-
Expressed In	-
Expressed_During	-
Domains/Interpro	Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232)
Best Arabiophosystemics	heat shock transcription factor A1D (TAIR:AT1G32330.1) Has 101009 Blast hits to 12266 proteins in 352 species: Archae - 60 Bacteria - 127 Metazoa - 1552 Fungi - 3291 Plants - 964 Viruses - 2 Other Eukaryotes - 95013 (source: NCBI BLink). & (reliability: 292.0) & (original description: len=436 path=[0:0-157 2:158-183 4:184-184 5:185-304 7:305-316 8:317-340 9:341-435])