Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Sequence Id | TRINITY_DN7294_c1_g3_i2 |
Heat Stress Genes | A2d |
Ensembl Plants | |
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New Transcript Id | TraesCS7B02G272500.1 |
Functional Annotation | |
Gene ontology | EMS60951.1 |
Protein family Detail | |
Type | - |
Transcripts Per Million | |
TPM | 2.61 |
Fragments Per Kilobase of transcript per Million mapped reads | |
FPKM | 1.8 |
Sequence | TCCCGTCGCGCTCGCTCCCGTACTCGGCAGGAGTATTTATCAGCGAGCACCGCCCACTTTCCCGCG GAAGGAAAGCAGCCAGCCAAAGACCACCTGCGTTGGGTGCCACTGTGCTAAGCAATTCTTTGCTTC TTTGGATTCTTCCGTCTGCGACAGGAGATCGCTGGTTGTTTGCTTGCTCGGCCACGAGGAGGGATG GACCGGGTGCTGCTGCCGGTGAGGGTGAAGGAGGAGTGGCCGCCGCCGCCGCCGGAGGAGGAGGAG GAGTTGGAGCATGGGGGCCTGGCGCCGCGGCCGATGGAGGGGCTGCACGAGACTGGCCCGCCGCCG TTCCTGACCAAGACGTTCGACCTGGTGTCCGACCCGGCCACCGACGGCATCGTCTCCTGGGGCCGC GCCGGGAACAGCTTCGTCGTCTGGGACCCGCACCTCTTCGCCACCCTGCTGCTGCCGAGGTACTTC AAGCACAGCAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTACGGATTCAGGAAGATAGGACTT GACAGGTGGGAG |
Metabolic Pathways | |
Description | loc_os10g28340.3 : 168.0) no description available & (at2g26150 : 149.0) member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. heat shock transcription factor A2 (HSFA2) |
Function | DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity |
Involve In | in 7 processes |
Located In | endomembrane system, nucleus |
Expressed In | 8 plant structures |
Expressed_During | 4 anthesis, C globular stage, petal differentiation and expansion stage |
Domains/Interpro | Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232) |
Best Arabiophosystemics | heat shock transcription factor A1D (TAIR:AT1G32330.1) Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12 Bacteria - 1396 Metazoa - 17338 Fungi - 3422 Plants - 5037 Viruses - 0 Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 298.0) & (original description: len=540 path=[0:0-539]) |