HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

Home

Sequence Id TRINITY_DN7730_c0_g1_i2
Heat Stress Genes A4b
Ensembl Plants
New Transcript Id TraesCS7D02G270600.2
Functional Annotation
Gene ontology XP_020165982.1
Protein family Detail
Type -
Transcripts Per Million
TPM 2.39
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 1.65
Sequence CGATCTCTGCCGGGATCTTCTCCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTTGTGCGCCA
GCTCAACACCTACGTAAGGAGAACAACTTCACACCCACCCTCCCCCTCTCTCCTCCGCCCAATCTC
TGTTCCGCCGCTGGAATTGGGGCCTGGCCGAAATGCGTGGCGGTTTCTTGCGCTGACATGTGAGGC
CATGAGCCAAGGAGGTTGTGTGGGTTATCGTGGACTTCGGTTCAGTTGGGCAAATAATCTGCGATT
TAGAACGAGTGCTTGTGATTTATTGCTCTTGTGATCCAAAATACACTTTATAGGTAGCTGCTTAGT
GTGCCGGATTATGCAATTTGTCATTTTACTTGGCATACTTTTAAACAACAAAGGTCAACTCTTGAT
TTGTTCTATATGTGAAATTCAACTAGCTTCGTTCAGTACTATCTCTTCTTGATCCTGTGGCTGTTT
GACAAATAAAATCTACCACACTCACTTCCGGTATAATTTGTTTACCTTCTGTTGCAGTACATGGTT
TATTTTAGCCTTGGTAATGGTAATGCATGATACCTCTTATGCGAATGTGAGGCTATTCTAATATTT
GTCACCTACTCGTTCTTATATAGGGCTTTAGGAAGGTAGATCCAGAACAATGGGAATTTGCAAATG
AAGAATTCATACGAGACCAGCGGCATCGGTTGAAAAATATCCATAGACGCAAGCCAATATTCAGCC
ATTCATCACATACTCAGGGTGCCGGACCATTAGCTGATAGTGAAAGGAGGGACTATGAGGAGGAAA
TTGAGAGGCTCAAGTGTGATAATGCATCACTGAACTTACAGCTTGAAAGGAAGAAAACTGATATGG
AGAGTAAAATGAAGGCTTTGGAAGACAAACTATTTGCTATCGAGGATCAGCAGAAAAATCTTATAT
CTTATGTCAGAGAAATTGTGAATGCACCTGGATTTTTGTCTAGCTTCGTAGAACAATCTGATCATC
ACGGAAAGAAGAGGAGACTGCCTAAACCAATTTC ATTCCATGAGGATACAAGTACTCAGGGGAA
CCAGATTATGCATTGTGACTTGGTCAACTCACCAACTCATGAACTTTTTAGGGCATCATTTGACAA
AATGGAATCATCCTTAAATTCCTTGGAGAATTTCTTCAAAGAAGCGAGCGAGGCATTTGGTAATGA
TGTTTCATATGATGGTGATGTCCCAGGTCATTCTTCAGCTGTTGTTCTTACAGAGCTCCATTCATC
TGCGGAGAGTGAGCCCCACGAGCAATCACCTCCGTCCATGATGCATACTTGTTCAGCTGGTGTAGG
AGATTCACACTCTTCTCGCGATATAGCAGAGTCCGCCAGCTGTCCAGAGAGTCCTCCGCTTCCCGA
AGCTCATTCTCGTGCAGATTCACGAGCTAAGGTCTCCGAGATAGATGTCAATTTGGAACCTGCTGC
TACAGAAACTGGTCCATCGAGAGATCAACAACCCACCCAAGACCCTCCTGCTGATGCAAATGATGG
ATTTTGGCAGCAGTTTCTTACCGAGCAGCCTGGGTCATCCCATGCACACCAGGAGGCCCAATCAGA
ACGGCGAGACAGAGAAGCAAATCAAACAACAGCAGGAGACCGCGGAAGTTTTTGGTGGGGCAAGAG
CGTCGAACAGATGACAGAAAAACTGGGGCATCTCACCTCAGCTGAGAAAACCTGAGTATGTACTTC
TCATTTCTTGTAGCTGAAAAATGACCAGTACAGAAACATTAGGACGATGGCACCTCCCAGTGAGAT
GTGCCTACTAACATTTACTTCGCAGTGTATCATAATCGCGTGCTTAGATTGTTGCAGACTATGTGC
TATACTACCTTGATATACGTTCATACTTTGTTAGCTACACGTTCAGACACCATTGTCAATGACTCG
TGATATTTTTCAGATTTGTGGTTCTTTTGTGACAACTACGCGTTGCAGTTCAGAGCTGTTGCCTGT
TGGAGGGTTTTTATTTTTATTTTTGTGCATGTTGCCAGCTATTTGAACCATGGTCAAGAATTTCCT
TGTT TGTGAAACATGAACCCTTGTTATTTCTTGCCGTAGTGGCTTCAGAT
Metabolic Pathways
Description loc_os01g54550.1:540.0)no description available & (at4g18880:172.0) member of Heat Stress Transcription Factor (Hsf) family heat shock transcription factor A4A (HSF A4A)
Function DNA binding, sequence-specific DNA binding transcription factor activity
Involve In response to chitin
Located In nucleus
Expressed In 23 plant structures
Expressed_During 13 growth stages
Domains/Interpro Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232)
Best Arabiophosystemics winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1) Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2 Bacteria - 4 Metazoa - 360 Fungi - 491 Plants - 856 Viruses - 0 Other Eukaryotes - 550 (source: NCBI BLink). & (reliability: 344.0) & (original description: len=2094 path=[0:0-79 1:80-617 2:618-2093])

Ensembl Plants
Sequence Id	TRINITY_DN7730_c0_g1_i2
Heat Stress Genes	A4b
New Transcript Id	TraesCS7D02G270600.2
Functional Annotation
Gene ontology	XP_020165982.1
Protein family Detail
Type	-
Transcripts Per Million
TPM	2.39
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	1.65
Sequence	CGATCTCTGCCGGGATCTTCTCCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTTGTGCGCCA GCTCAACACCTACGTAAGGAGAACAACTTCACACCCACCCTCCCCCTCTCTCCTCCGCCCAATCTC TGTTCCGCCGCTGGAATTGGGGCCTGGCCGAAATGCGTGGCGGTTTCTTGCGCTGACATGTGAGGC CATGAGCCAAGGAGGTTGTGTGGGTTATCGTGGACTTCGGTTCAGTTGGGCAAATAATCTGCGATT TAGAACGAGTGCTTGTGATTTATTGCTCTTGTGATCCAAAATACACTTTATAGGTAGCTGCTTAGT GTGCCGGATTATGCAATTTGTCATTTTACTTGGCATACTTTTAAACAACAAAGGTCAACTCTTGAT TTGTTCTATATGTGAAATTCAACTAGCTTCGTTCAGTACTATCTCTTCTTGATCCTGTGGCTGTTT GACAAATAAAATCTACCACACTCACTTCCGGTATAATTTGTTTACCTTCTGTTGCAGTACATGGTT TATTTTAGCCTTGGTAATGGTAATGCATGATACCTCTTATGCGAATGTGAGGCTATTCTAATATTT GTCACCTACTCGTTCTTATATAGGGCTTTAGGAAGGTAGATCCAGAACAATGGGAATTTGCAAATG AAGAATTCATACGAGACCAGCGGCATCGGTTGAAAAATATCCATAGACGCAAGCCAATATTCAGCC ATTCATCACATACTCAGGGTGCCGGACCATTAGCTGATAGTGAAAGGAGGGACTATGAGGAGGAAA TTGAGAGGCTCAAGTGTGATAATGCATCACTGAACTTACAGCTTGAAAGGAAGAAAACTGATATGG AGAGTAAAATGAAGGCTTTGGAAGACAAACTATTTGCTATCGAGGATCAGCAGAAAAATCTTATAT CTTATGTCAGAGAAATTGTGAATGCACCTGGATTTTTGTCTAGCTTCGTAGAACAATCTGATCATC ACGGAAAGAAGAGGAGACTGCCTAAACCAATTTC ATTCCATGAGGATACAAGTACTCAGGGGAA CCAGATTATGCATTGTGACTTGGTCAACTCACCAACTCATGAACTTTTTAGGGCATCATTTGACAA AATGGAATCATCCTTAAATTCCTTGGAGAATTTCTTCAAAGAAGCGAGCGAGGCATTTGGTAATGA TGTTTCATATGATGGTGATGTCCCAGGTCATTCTTCAGCTGTTGTTCTTACAGAGCTCCATTCATC TGCGGAGAGTGAGCCCCACGAGCAATCACCTCCGTCCATGATGCATACTTGTTCAGCTGGTGTAGG AGATTCACACTCTTCTCGCGATATAGCAGAGTCCGCCAGCTGTCCAGAGAGTCCTCCGCTTCCCGA AGCTCATTCTCGTGCAGATTCACGAGCTAAGGTCTCCGAGATAGATGTCAATTTGGAACCTGCTGC TACAGAAACTGGTCCATCGAGAGATCAACAACCCACCCAAGACCCTCCTGCTGATGCAAATGATGG ATTTTGGCAGCAGTTTCTTACCGAGCAGCCTGGGTCATCCCATGCACACCAGGAGGCCCAATCAGA ACGGCGAGACAGAGAAGCAAATCAAACAACAGCAGGAGACCGCGGAAGTTTTTGGTGGGGCAAGAG CGTCGAACAGATGACAGAAAAACTGGGGCATCTCACCTCAGCTGAGAAAACCTGAGTATGTACTTC TCATTTCTTGTAGCTGAAAAATGACCAGTACAGAAACATTAGGACGATGGCACCTCCCAGTGAGAT GTGCCTACTAACATTTACTTCGCAGTGTATCATAATCGCGTGCTTAGATTGTTGCAGACTATGTGC TATACTACCTTGATATACGTTCATACTTTGTTAGCTACACGTTCAGACACCATTGTCAATGACTCG TGATATTTTTCAGATTTGTGGTTCTTTTGTGACAACTACGCGTTGCAGTTCAGAGCTGTTGCCTGT TGGAGGGTTTTTATTTTTATTTTTGTGCATGTTGCCAGCTATTTGAACCATGGTCAAGAATTTCCT TGTT TGTGAAACATGAACCCTTGTTATTTCTTGCCGTAGTGGCTTCAGAT
Metabolic Pathways
Description	loc_os01g54550.1:540.0)no description available & (at4g18880:172.0) member of Heat Stress Transcription Factor (Hsf) family heat shock transcription factor A4A (HSF A4A)
Function	DNA binding, sequence-specific DNA binding transcription factor activity
Involve In	response to chitin
Located In	nucleus
Expressed In	23 plant structures
Expressed_During	13 growth stages
Domains/Interpro	Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232)
Best Arabiophosystemics	winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1) Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2 Bacteria - 4 Metazoa - 360 Fungi - 491 Plants - 856 Viruses - 0 Other Eukaryotes - 550 (source: NCBI BLink). & (reliability: 344.0) & (original description: len=2094 path=[0:0-79 1:80-617 2:618-2093])