HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN11532_c0_g1_i4
Heat Stress Genes A3
Ensembl Plants
New Transcript Id TraesCSU02G127200.1
Functional Annotation
Gene ontology XP_020146599.1
Protein family Detail
Type -
Transcripts Per Million
TPM 1.62
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 2.5
Sequence CTCCCGCACAACTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCATCACTTATGGTTTT
TGCAAGGTTCATGCTAATAGATGGGAGTTTGCTCACGAGGGATTTCTGCGGGGCAGCAAACATTTG
TTGAAGACGATTGTCAGGCGCCGGTCCTCGCCGACGCAACAAAGCAGCCCTCAGCCTGGTTCATCT
ATCTTCAGGAAGATACAGTCTAGTTCTTGTGGTGAGTCCACTCTGGACCCTGAACTGCGCTCCCTG
AGAAGAGAGAAAAACGCGCTGCTACAGGAGGTGGCCAGGCTGAAGGAGGAGCACAATCAGACGATC
GAGCATCTGAACGCACTGAACCAGAGGCTGGAGACCGCGGAGGACCGGCAGAAGCAGGTGGTCTCC
TTCTTGGCCAAGCTCCTTCAGAACCCGGATTTCCTGAGGCAACTCAAGATGCACAGGGGGAGAAGG
GACGGGATCGATTCCTCCAGAGTGAAGAGGAAGTTCCTGAAGCATGTACCGCATGGCAGCAGAGAC
TCGGGCGACTCCAGCTTGCCGCGCACCGCAGAGAGTACATGTTCCCCTGC
Metabolic Pathways
Description (loc_os02g32590.1 : 241.0) no description available & (at5g03720 : 144.0) Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in establishing thermotolerence.; heat shock transcription factor A3 (HSFA3);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: response to heat, regulation of transcription, DNA-dependent, response to chitin;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: 13 plant structures;
Expressed_During EXPRESSED DURING: 9 growth stages;
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1D (TAIR:AT1G32330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 260.0) & (original description: len=578 path=[1:0-217 3:218-275 4:276-577])

Ensembl Plants
Sequence Id	TRINITY_DN11532_c0_g1_i4
Heat Stress Genes	A3
New Transcript Id	TraesCSU02G127200.1
Functional Annotation
Gene ontology	XP_020146599.1
Protein family Detail
Type	-
Transcripts Per Million
TPM	1.62
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	2.5
Sequence	CTCCCGCACAACTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCATCACTTATGGTTTT TGCAAGGTTCATGCTAATAGATGGGAGTTTGCTCACGAGGGATTTCTGCGGGGCAGCAAACATTTG TTGAAGACGATTGTCAGGCGCCGGTCCTCGCCGACGCAACAAAGCAGCCCTCAGCCTGGTTCATCT ATCTTCAGGAAGATACAGTCTAGTTCTTGTGGTGAGTCCACTCTGGACCCTGAACTGCGCTCCCTG AGAAGAGAGAAAAACGCGCTGCTACAGGAGGTGGCCAGGCTGAAGGAGGAGCACAATCAGACGATC GAGCATCTGAACGCACTGAACCAGAGGCTGGAGACCGCGGAGGACCGGCAGAAGCAGGTGGTCTCC TTCTTGGCCAAGCTCCTTCAGAACCCGGATTTCCTGAGGCAACTCAAGATGCACAGGGGGAGAAGG GACGGGATCGATTCCTCCAGAGTGAAGAGGAAGTTCCTGAAGCATGTACCGCATGGCAGCAGAGAC TCGGGCGACTCCAGCTTGCCGCGCACCGCAGAGAGTACATGTTCCCCTGC
Metabolic Pathways
Description	(loc_os02g32590.1 : 241.0) no description available & (at5g03720 : 144.0) Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in establishing thermotolerence.; heat shock transcription factor A3 (HSFA3);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: response to heat, regulation of transcription, DNA-dependent, response to chitin;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: 13 plant structures;
Expressed_During	EXPRESSED DURING: 9 growth stages;
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1D (TAIR:AT1G32330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 260.0) & (original description: len=578 path=[1:0-217 3:218-275 4:276-577])