HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN4716_c0_g1_i1
Heat Stress Genes A1D
Ensembl Plants
New Transcript Id TraesCS7B02G272500.1
Functional Annotation
Gene ontology AHZ44763.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 3.97
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 6.12
Sequence CTGGCAACAAAAGGGATTATAATTCATTCTAAGCAACAATTAAAAACACAACAGGTCCGATGCACA
CAGGCTTTCAGTCATTAAACTTGTCCAGTTTAAGACTAAGTTTAGTCAGGTACAAATGGAATACTG
CTTGACTAGTAAAAGTTTCGAGTGTTGTACGACCAAACATAACATCACCGAAAGCAAATTAAACAT
CGTGCACTCTTCCTGCTTCGTCGTGGTAAAAGATTAGATCGGCTCCTTCCATACAAGAAAATACAC
ATATAGGGAGGTCTCCTTCCATACAAGAAACGTCGACTCCATGCCAAGAAACGAGGTTCCTACCAA
ACCTAGAACAAGCCTTGGGCCCAGCAGCAGCGAAAAGATTAACCCACAAATCAGCAATACAGACAA
CACAAGTGCCAAACACCACCATTTTTCTGGATTCCATAGAGGCCAGCGATCCTGGATAGCGCGAGG
AGCTAGTCTTTTACATGTTTCGGTTCAGGTCGGTGTTAGTCGCAACCAGAAAAGCACATGAGAAAC
ACAACGCACGGTCGTTAGTTTTTACGCCTGCCAGAAAACCTTATAGATACAAAAAGATCGGAGTCC
TCCCACACCAGCTGTCGACAGGCATTTCACAGTTCAGTATGATTGCGTAAGGATAAACTATAGGAG
CTAGTTTTATTACCAGGTTGGACCCCAGGGCGCCTTGAGAGAGGGTCGCTGTGAGTAGGTACCTCA
CCCTCTATGGTTGGATGACAGCAACCCCATTTGTTCAGTCAGGTTTGCCAAGTTCTCGGTCCTGGT
CCATCCATTCTCCTCTTGCGCTTCCCTTGTGTCCAGCAGACCTGAGTCGACCTCGTCGTTGTCGAT
GGAGAGAGGGCTGGCACAAAGGAACTGCTCCCAGAAGGAATCAATGATTCCCGGAAGCTTCTGGGT
GTCATCGGTCTCATCAGTGTCGATGGGGTCCATGGGAACAGAGTCATCACTGCCTTCATCAGGTAG
GGGGAATATACACTCAGGACCAGGCATTGCGAAA
Metabolic Pathways
Description (loc_os03g63750.1 : 686.0) no description available & (at1g32330 : 355.0) Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.; heat shock transcription factor A1D (HSFA1D);
Function FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: response to heat;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: 24 plant structures;
Expressed_During EXPRESSED DURING: 15 growth stages;
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2363 Blast hits to 2344 proteins in 251 species: Archae - 0; Bacteria - 10; Metazoa - 417; Fungi - 488; Plants - 855; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink). & (reliability: 710.0) & (original description: len=2186 path=[2:0-444 5:445-521 6:522-813 8:814-849 9:850-1088 11:1089-1135 12:1136-1220 14:1221-1251 15:1252-1550 16:1551-1581 18:1582-1595 20:1596-1659 21:1660-2052 22:2053-2185])

Ensembl Plants
Sequence Id	TRINITY_DN4716_c0_g1_i1
Heat Stress Genes	A1D
New Transcript Id	TraesCS7B02G272500.1
Functional Annotation
Gene ontology	AHZ44763.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	3.97
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	6.12
Sequence	CTGGCAACAAAAGGGATTATAATTCATTCTAAGCAACAATTAAAAACACAACAGGTCCGATGCACA CAGGCTTTCAGTCATTAAACTTGTCCAGTTTAAGACTAAGTTTAGTCAGGTACAAATGGAATACTG CTTGACTAGTAAAAGTTTCGAGTGTTGTACGACCAAACATAACATCACCGAAAGCAAATTAAACAT CGTGCACTCTTCCTGCTTCGTCGTGGTAAAAGATTAGATCGGCTCCTTCCATACAAGAAAATACAC ATATAGGGAGGTCTCCTTCCATACAAGAAACGTCGACTCCATGCCAAGAAACGAGGTTCCTACCAA ACCTAGAACAAGCCTTGGGCCCAGCAGCAGCGAAAAGATTAACCCACAAATCAGCAATACAGACAA CACAAGTGCCAAACACCACCATTTTTCTGGATTCCATAGAGGCCAGCGATCCTGGATAGCGCGAGG AGCTAGTCTTTTACATGTTTCGGTTCAGGTCGGTGTTAGTCGCAACCAGAAAAGCACATGAGAAAC ACAACGCACGGTCGTTAGTTTTTACGCCTGCCAGAAAACCTTATAGATACAAAAAGATCGGAGTCC TCCCACACCAGCTGTCGACAGGCATTTCACAGTTCAGTATGATTGCGTAAGGATAAACTATAGGAG CTAGTTTTATTACCAGGTTGGACCCCAGGGCGCCTTGAGAGAGGGTCGCTGTGAGTAGGTACCTCA CCCTCTATGGTTGGATGACAGCAACCCCATTTGTTCAGTCAGGTTTGCCAAGTTCTCGGTCCTGGT CCATCCATTCTCCTCTTGCGCTTCCCTTGTGTCCAGCAGACCTGAGTCGACCTCGTCGTTGTCGAT GGAGAGAGGGCTGGCACAAAGGAACTGCTCCCAGAAGGAATCAATGATTCCCGGAAGCTTCTGGGT GTCATCGGTCTCATCAGTGTCGATGGGGTCCATGGGAACAGAGTCATCACTGCCTTCATCAGGTAG GGGGAATATACACTCAGGACCAGGCATTGCGAAA
Metabolic Pathways
Description	(loc_os03g63750.1 : 686.0) no description available & (at1g32330 : 355.0) Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.; heat shock transcription factor A1D (HSFA1D);
Function	FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: response to heat;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: 24 plant structures;
Expressed_During	EXPRESSED DURING: 15 growth stages;
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2363 Blast hits to 2344 proteins in 251 species: Archae - 0; Bacteria - 10; Metazoa - 417; Fungi - 488; Plants - 855; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink). & (reliability: 710.0) & (original description: len=2186 path=[2:0-444 5:445-521 6:522-813 8:814-849 9:850-1088 11:1089-1135 12:1136-1220 14:1221-1251 15:1252-1550 16:1551-1581 18:1582-1595 20:1596-1659 21:1660-2052 22:2053-2185])