HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN4716_c0_g1_i2
Heat Stress Genes A4b
Ensembl Plants
New Transcript Id TraesCS7B02G168300.2
Functional Annotation
Gene ontology XP_020165982.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 6.46
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 9.98
Sequence GCCAAGGGACATCTTGATGCACAAAAGGCGCCGTTGATGGCGATGACACAACGCAAGAAACCAAAT
GAACCATGATATCACTGATCATCTGAAGCCACTACGGCAAGAAATAACAAGGGTTCATGTTTCACA
AACAAGGAAATTCTTGACCATGGTTCAAATAGCTGGCAACATGCACAAAAATAAAAATAAAAACCC
TCCAACAGGCAACGCGTAGTTGTCACAAAAGAACCACAAATCTGGGAAATATCACGAGTCGTTGAC
AATGGTGTCTGAACGTGTAGCTAACAAAGTATGAACGTATATCAAGGTAGTATAGCACATAGTCTG
CAACAATCTAAGCACGCAATTATGATACACTGCAAAGTAAATGTTAGTAGGCATATCTCACTGGGA
GCTGCCATCGTCCTAATGTTTCTGTACTGGTCATTTTTCAGCTACAAGAAATGAGAAATACATACT
CAGGTTTTCTCAGCTGAGGTGAGATGCCCCAGTTTTTCTGTCATCTGTTCGACGCTCTTGCCCCAC
CAAAAACTTCCGCGGTCTCCTGCTGTTGTTTGATTTGCTTCTCTGTCTCGCCGTTCTGATTGGGCC
TCCTGGTGTGCATGGGTCAACCCAGGCTGCTCGGTAAGAAACTGCTGCCAAAATCCATCATTTGCG
TCAGCAGGAAGGTCTTGGGTGGGTTGTTGATCTCTCGATGGACCATTTTCTGTAACAGCAGGTTCT
AAATTGACATCTATCTCGGAGACCTTAGCTCGTGAATCTGCACGAGAATGAGCTTGGGGAAGCAGA
GGACTCTCTGGACAGCTGGCGGACTCTGCTATATCACGAGAAGAGTGTGAATCTCCTACACCAGCT
GAACAAGTATGCATCATGGACGGAGGTGATTGCGCGTGGGGGTCACTCTCCCCAGTTGAATGGAGC
TCTGTAAGAACAACAGCTGAAGAATGACCTGGGACATCACCATCATATGAAACATCATTACCAAAT
GCCTCGCTCGCTTCTTTGAAGAAATTCTCCAAGG
Metabolic Pathways
Description (loc_os01g54550.1 : 630.0) no description available & (at4g18880 : 259.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A4A (HSF A4A);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: response to chitin;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: 23 plant structures;
Expressed_During EXPRESSED DURING: 13 growth stages;
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink). & (reliability: 518.0) & (original description: len=1717 path=[1:0-1559 3:1560-1583 22:1584-1716])

Ensembl Plants
Sequence Id	TRINITY_DN4716_c0_g1_i2
Heat Stress Genes	A4b
New Transcript Id	TraesCS7B02G168300.2
Functional Annotation
Gene ontology	XP_020165982.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	6.46
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	9.98
Sequence	GCCAAGGGACATCTTGATGCACAAAAGGCGCCGTTGATGGCGATGACACAACGCAAGAAACCAAAT GAACCATGATATCACTGATCATCTGAAGCCACTACGGCAAGAAATAACAAGGGTTCATGTTTCACA AACAAGGAAATTCTTGACCATGGTTCAAATAGCTGGCAACATGCACAAAAATAAAAATAAAAACCC TCCAACAGGCAACGCGTAGTTGTCACAAAAGAACCACAAATCTGGGAAATATCACGAGTCGTTGAC AATGGTGTCTGAACGTGTAGCTAACAAAGTATGAACGTATATCAAGGTAGTATAGCACATAGTCTG CAACAATCTAAGCACGCAATTATGATACACTGCAAAGTAAATGTTAGTAGGCATATCTCACTGGGA GCTGCCATCGTCCTAATGTTTCTGTACTGGTCATTTTTCAGCTACAAGAAATGAGAAATACATACT CAGGTTTTCTCAGCTGAGGTGAGATGCCCCAGTTTTTCTGTCATCTGTTCGACGCTCTTGCCCCAC CAAAAACTTCCGCGGTCTCCTGCTGTTGTTTGATTTGCTTCTCTGTCTCGCCGTTCTGATTGGGCC TCCTGGTGTGCATGGGTCAACCCAGGCTGCTCGGTAAGAAACTGCTGCCAAAATCCATCATTTGCG TCAGCAGGAAGGTCTTGGGTGGGTTGTTGATCTCTCGATGGACCATTTTCTGTAACAGCAGGTTCT AAATTGACATCTATCTCGGAGACCTTAGCTCGTGAATCTGCACGAGAATGAGCTTGGGGAAGCAGA GGACTCTCTGGACAGCTGGCGGACTCTGCTATATCACGAGAAGAGTGTGAATCTCCTACACCAGCT GAACAAGTATGCATCATGGACGGAGGTGATTGCGCGTGGGGGTCACTCTCCCCAGTTGAATGGAGC TCTGTAAGAACAACAGCTGAAGAATGACCTGGGACATCACCATCATATGAAACATCATTACCAAAT GCCTCGCTCGCTTCTTTGAAGAAATTCTCCAAGG
Metabolic Pathways
Description	(loc_os01g54550.1 : 630.0) no description available & (at4g18880 : 259.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A4A (HSF A4A);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: response to chitin;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: 23 plant structures;
Expressed_During	EXPRESSED DURING: 13 growth stages;
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink). & (reliability: 518.0) & (original description: len=1717 path=[1:0-1559 3:1560-1583 22:1584-1716])