Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Sequence Id | TRINITY_DN4716_c0_g1_i5 |
Heat Stress Genes | B4 |
Ensembl Plants | |
---|---|
New Transcript Id | TraesCS7D02G270600.1 |
Functional Annotation | |
Gene ontology | BAK04233.1 |
Protein family Detail | |
Type | - |
Transcripts Per Million | |
TPM | 6.63 |
Fragments Per Kilobase of transcript per Million mapped reads | |
FPKM | 10.24 |
Sequence | GCGGCGGTGGCCGCCACCGTCGGCGTCACCTTTCGCCGATGTATGTCACAAAGCAGCCGCTTTTCT CCTCGACGGAAGCAGTCGTTGGCGAACTCCCACCTGTCCGGCACAATCTTCCTAAATCCGTAGGTG TTGAGTTGGCGCACGAAGCTGGAGAAGTTATTGTGCTTGAAGTACTTGGGGAGGAGGTCCCGGGCG AACTCGGGCGTGTTCCAGACGATGAAGCTGTTGTTGGCCGGGCCCCAGGAGACGACGGCGTCCGTG GCCGGGTCGTCCACCATGTCGTACGTCTTCA |
Metabolic Pathways | |
Description | (loc_os08g43334.2 : 168.0) no description available & (at1g46264 : 160.0) Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions.; heat shock transcription factor B4 (HSFB4); |
Function | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; |
Involve In | INVOLVED IN: asymmetric cell division; |
Located In | LOCATED IN: nucleus; |
Expressed In | EXPRESSED IN: 17 plant structures; |
Expressed_During | EXPRESSED DURING: 8 growth stages; |
Domains/Interpro | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); |
Best Arabiophosystemics | BEST Arabidopsis thaliana protein match is: heat shock factor 4 (TAIR:AT4G36990.1); Has 2061 Blast hits to 2048 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 468; Plants - 781; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). & (reliability: 300.0) & (original description: len=295 path=[0:0-137 3:138-161 22:162-294]) |