HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)



Sequence IdTRINITY_DN4716_c0_g1_i5
Heat Stress GenesB4
Ensembl Plants
New Transcript IdTraesCS7D02G270600.1
Functional Annotation
Gene ontologyBAK04233.1
Protein family Detail
Type-
Transcripts Per Million
TPM6.63
Fragments Per Kilobase of transcript per Million mapped reads
FPKM10.24
SequenceGCGGCGGTGGCCGCCACCGTCGGCGTCACCTTTCGCCGATGTATGTCACAAAGCAGCCGCTTTTCT
CCTCGACGGAAGCAGTCGTTGGCGAACTCCCACCTGTCCGGCACAATCTTCCTAAATCCGTAGGTG
TTGAGTTGGCGCACGAAGCTGGAGAAGTTATTGTGCTTGAAGTACTTGGGGAGGAGGTCCCGGGCG
AACTCGGGCGTGTTCCAGACGATGAAGCTGTTGTTGGCCGGGCCCCAGGAGACGACGGCGTCCGTG
GCCGGGTCGTCCACCATGTCGTACGTCTTCA
Metabolic Pathways
Description(loc_os08g43334.2 : 168.0) no description available & (at1g46264 : 160.0) Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions.; heat shock transcription factor B4 (HSFB4);
FunctionFUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve InINVOLVED IN: asymmetric cell division;
Located InLOCATED IN: nucleus;
Expressed InEXPRESSED IN: 17 plant structures;
Expressed_DuringEXPRESSED DURING: 8 growth stages;
Domains/InterproCONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best ArabiophosystemicsBEST Arabidopsis thaliana protein match is: heat shock factor 4 (TAIR:AT4G36990.1); Has 2061 Blast hits to 2048 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 468; Plants - 781; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). & (reliability: 300.0) & (original description: len=295 path=[0:0-137 3:138-161 22:162-294])