HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN4716_c0_g1_i7
Heat Stress Genes A1D
Ensembl Plants
New Transcript Id TraesCS7D02G367700.1
Functional Annotation
Gene ontology AHZ44763.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 8.63
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 13.33
Sequence CTGGCAACAAAAGGGATTATAATTCATTCTAAGCAACAATTAAAAACACAACAGGTCCGATGCACA
CAGGCTTTCAGTCATTAAACTTGTCCAGTTTAAGACTAAGTTTAGTCAGGTACAAATGGAATACTG
CTTGACTAGTAAAAGTTTCGAGTGTTGTACGACCAAACATAACATCACCGAAAGCAAATTAAACAT
CGTGCACTCTTCCTGCTTCGTCGTGGTAAAAGATTAGATCGGCTCCTTCCATACAAGAAAATACAC
ATATAGGGAGGTCTCCTTCCATACAAGAAACGTCGACTCCATGCCAAGAAACGAGGTTCCTACCAA
ACCTAGAACAAGCCTTGGGCCCAGCAGCAGCGAAAAGATTAACCCACAAATCAGCAATACAGACAA
CACAAGTGCCAAACACCACCATTTTTCTGGATTCCATAGAGGCCAGCGACCCTGGATAGCGCGAGG
AGCTGCTAGTCTTTTACATGTTTTGGTTCAGGTAGGTGTTAGTCGCAACCAGACGAGCACAGCAGA
AACACAACGCACGGTCGTTAGTTTTTACGCCTGCCAGAAAACCTTATAGATACAAAAAGATCGGAG
TCCTCCCACACCAGCTGTCGACAGGCATTTCACAGTTCAGTATGATTGCGTAAGGATAAACTATAG
GAGCTAGTTTTATTACCAGGTTGGACCCCAGGGCGCCTTGAGAGAGGGTCGCTGTGAGTAGGTACC
TCACCCTCTATGGTTGGATGACAGCAACCCCATTTGTTCAGTCAGGTTTGCCAAGTTCTCGGTCCT
GGTCCATCCATTCTCCTCTTGCGCTTCCCTTGTGTCCAGCAGACCTGAGTCGACCTCGTCGTTGTC
GATGGAGAGAGGGCTGGCACAAAGGAACTGCTCCCAGAAGGAATCAATGATTCCCGGAAGCTTCTG
GGTGTCATCGGTCTCATCAGTGTCGATGGGGTCCATGGGAACAGAGTCATCACTGCCTTCATCAGG
TAGGGGGAATATACACTCAGGACCAGGCATTGCG
Metabolic Pathways
Description (loc_os03g63750.1 : 686.0) no description available & (at1g32330 : 355.0) Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.; heat shock transcription factor A1D (HSFA1D);
Function FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: response to heat;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: 24 plant structures;
Expressed_During EXPRESSED DURING: 15 growth stages;
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2363 Blast hits to 2344 proteins in 251 species: Archae - 0; Bacteria - 10; Metazoa - 417; Fungi - 488; Plants - 855; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink). & (reliability: 710.0) & (original description: len=2189 path=[2:0-444 4:445-524 6:525-816 8:817-852 9:853-1091 11:1092-1138 12:1139-1223 14:1224-1254 15:1255-1553 16:1554-1584 18:1585-1598 19:1599-1662 21:1663-2055 22:2056-2188])

Ensembl Plants
Sequence Id	TRINITY_DN4716_c0_g1_i7
Heat Stress Genes	A1D
New Transcript Id	TraesCS7D02G367700.1
Functional Annotation
Gene ontology	AHZ44763.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	8.63
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	13.33
Sequence	CTGGCAACAAAAGGGATTATAATTCATTCTAAGCAACAATTAAAAACACAACAGGTCCGATGCACA CAGGCTTTCAGTCATTAAACTTGTCCAGTTTAAGACTAAGTTTAGTCAGGTACAAATGGAATACTG CTTGACTAGTAAAAGTTTCGAGTGTTGTACGACCAAACATAACATCACCGAAAGCAAATTAAACAT CGTGCACTCTTCCTGCTTCGTCGTGGTAAAAGATTAGATCGGCTCCTTCCATACAAGAAAATACAC ATATAGGGAGGTCTCCTTCCATACAAGAAACGTCGACTCCATGCCAAGAAACGAGGTTCCTACCAA ACCTAGAACAAGCCTTGGGCCCAGCAGCAGCGAAAAGATTAACCCACAAATCAGCAATACAGACAA CACAAGTGCCAAACACCACCATTTTTCTGGATTCCATAGAGGCCAGCGACCCTGGATAGCGCGAGG AGCTGCTAGTCTTTTACATGTTTTGGTTCAGGTAGGTGTTAGTCGCAACCAGACGAGCACAGCAGA AACACAACGCACGGTCGTTAGTTTTTACGCCTGCCAGAAAACCTTATAGATACAAAAAGATCGGAG TCCTCCCACACCAGCTGTCGACAGGCATTTCACAGTTCAGTATGATTGCGTAAGGATAAACTATAG GAGCTAGTTTTATTACCAGGTTGGACCCCAGGGCGCCTTGAGAGAGGGTCGCTGTGAGTAGGTACC TCACCCTCTATGGTTGGATGACAGCAACCCCATTTGTTCAGTCAGGTTTGCCAAGTTCTCGGTCCT GGTCCATCCATTCTCCTCTTGCGCTTCCCTTGTGTCCAGCAGACCTGAGTCGACCTCGTCGTTGTC GATGGAGAGAGGGCTGGCACAAAGGAACTGCTCCCAGAAGGAATCAATGATTCCCGGAAGCTTCTG GGTGTCATCGGTCTCATCAGTGTCGATGGGGTCCATGGGAACAGAGTCATCACTGCCTTCATCAGG TAGGGGGAATATACACTCAGGACCAGGCATTGCG
Metabolic Pathways
Description	(loc_os03g63750.1 : 686.0) no description available & (at1g32330 : 355.0) Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.; heat shock transcription factor A1D (HSFA1D);
Function	FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: response to heat;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: 24 plant structures;
Expressed_During	EXPRESSED DURING: 15 growth stages;
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2363 Blast hits to 2344 proteins in 251 species: Archae - 0; Bacteria - 10; Metazoa - 417; Fungi - 488; Plants - 855; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink). & (reliability: 710.0) & (original description: len=2189 path=[2:0-444 4:445-524 6:525-816 8:817-852 9:853-1091 11:1092-1138 12:1139-1223 14:1224-1254 15:1255-1553 16:1554-1584 18:1585-1598 19:1599-1662 21:1663-2055 22:2056-2188])