HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN4716_c0_g1_i8
Heat Stress Genes A1E
Ensembl Plants
New Transcript Id TraesCS4A02G322300.1
Functional Annotation
Gene ontology AHZ44763.1
Protein family Detail
Type -
Transcripts Per Million
TPM 0.93
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 1.43
Sequence CTGGCAACAAAAGGGATTATAATTCATTCTAAGCAACAATTAAAAACACAACAGGTCCGATGCACA
CAGGCTTTCAGTCATTAAACTTGTCCAGTTTAAGACTAAGTTTAGTCAGGTACAAATGGAATACTG
CTTGACTAGTAAAAGTTTCGAGTGTTGTACGACCAAACATAACATCACCGAAAGCAAATTAAACAT
CGTGCACTCTTCCTGCTTCGTCGTGGTAAAAGATTAGATCGGCTCCTTCCATACAAGAAAATACAC
ATATAGGGAGGTCTCCTTCCATACAAGAAACGTCGACTCCATGCCAAGAAACGAGGTTCCTACCAA
ACCTAGAACAAGCCTTGGGCCCAGCAGCAGCGAAAAGATTAACCCACAAATCAGCAATACAGACAA
CACAAGTGCCAAACACCACCATTTTTCTGGATTCCATAGAGGCCAGCGATCCTGGATAGCGCGAGG
AGCTAGTCTTTTACATGTTTCGGTTCAGGTCGGTGTTAGTCGCAACCAGAAAAGCACATGAGAAAC
ACAACGCACGGTCGTTAGTTTTTACGCCTGCCAGAAAACCTTATAGATACAAAAAGATCGGAGTCC
TCCCACACCAGCTGTCGACAGGCATTTCACAGTTCAGTATGATTGCGTAAGGATAAACTATAGGAG
CTAGTTTTATTACCAGGTTGGACCCCAGGGCGCCTTGAGAGAGGGTCGCTGTGAGTAGGTACCTCA
CCCTCTATGGTTGGATGACAGCAACCCCATTTGTTCAGTCAGGTTTGCCAAGTTCTCGGTCCTGGT
CCATCCATTCTCCTCTTGCGCTCCCCGTGTGTCCAGCAGACCTGAATCGACCTCGTCATTGTCGAT
GGAGAGAGGGCTGGCACAAAGGAACTGCTCCCAGAAGGAATCAATGATTCCCGGAAGCTTCTGGGT
GTCATCGGTCTCATCAGTGTCGATGGGGTCCATGGGAACAGAGTCATCACTGCCTTCATCAGGTAG
GGGGAATATACACTCAGGACCAGGCATTGCGAAA
Metabolic Pathways
Description (loc_os03g63750.1 : 375.0) no description available & (at5g16820 : 103.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function -
Involve In -
Located In -
Expressed In -
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 206.0) & (original description: len=1551 path=[2:0-444 5:445-521 6:522-813 7:814-849 9:850-1088 10:1089-1135 12:1136-1220 14:1221-1251 15:1252-1550])

Ensembl Plants
Sequence Id	TRINITY_DN4716_c0_g1_i8
Heat Stress Genes	A1E
New Transcript Id	TraesCS4A02G322300.1
Functional Annotation
Gene ontology	AHZ44763.1
Protein family Detail
Type	-
Transcripts Per Million
TPM	0.93
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	1.43
Sequence	CTGGCAACAAAAGGGATTATAATTCATTCTAAGCAACAATTAAAAACACAACAGGTCCGATGCACA CAGGCTTTCAGTCATTAAACTTGTCCAGTTTAAGACTAAGTTTAGTCAGGTACAAATGGAATACTG CTTGACTAGTAAAAGTTTCGAGTGTTGTACGACCAAACATAACATCACCGAAAGCAAATTAAACAT CGTGCACTCTTCCTGCTTCGTCGTGGTAAAAGATTAGATCGGCTCCTTCCATACAAGAAAATACAC ATATAGGGAGGTCTCCTTCCATACAAGAAACGTCGACTCCATGCCAAGAAACGAGGTTCCTACCAA ACCTAGAACAAGCCTTGGGCCCAGCAGCAGCGAAAAGATTAACCCACAAATCAGCAATACAGACAA CACAAGTGCCAAACACCACCATTTTTCTGGATTCCATAGAGGCCAGCGATCCTGGATAGCGCGAGG AGCTAGTCTTTTACATGTTTCGGTTCAGGTCGGTGTTAGTCGCAACCAGAAAAGCACATGAGAAAC ACAACGCACGGTCGTTAGTTTTTACGCCTGCCAGAAAACCTTATAGATACAAAAAGATCGGAGTCC TCCCACACCAGCTGTCGACAGGCATTTCACAGTTCAGTATGATTGCGTAAGGATAAACTATAGGAG CTAGTTTTATTACCAGGTTGGACCCCAGGGCGCCTTGAGAGAGGGTCGCTGTGAGTAGGTACCTCA CCCTCTATGGTTGGATGACAGCAACCCCATTTGTTCAGTCAGGTTTGCCAAGTTCTCGGTCCTGGT CCATCCATTCTCCTCTTGCGCTCCCCGTGTGTCCAGCAGACCTGAATCGACCTCGTCATTGTCGAT GGAGAGAGGGCTGGCACAAAGGAACTGCTCCCAGAAGGAATCAATGATTCCCGGAAGCTTCTGGGT GTCATCGGTCTCATCAGTGTCGATGGGGTCCATGGGAACAGAGTCATCACTGCCTTCATCAGGTAG GGGGAATATACACTCAGGACCAGGCATTGCGAAA
Metabolic Pathways
Description	(loc_os03g63750.1 : 375.0) no description available & (at5g16820 : 103.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function	-
Involve In	-
Located In	-
Expressed In	-
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 206.0) & (original description: len=1551 path=[2:0-444 5:445-521 6:522-813 7:814-849 9:850-1088 10:1089-1135 12:1136-1220 14:1221-1251 15:1252-1550])