HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN5870_c0_g1_i1
Heat Stress Genes A9
Ensembl Plants
New Transcript Id TraesCS7D02G261700.2
Functional Annotation
Gene ontology XP_020148069.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 5.23
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 8.08
Sequence CGCTTAATAAATGTCAATGGAACATTACATTTTCGCTGGAAGTTCACAGAATGTACAGAACAGGTT
GACATTTACAGAACACAACAGCATATACAGAGTGAATTTCATGTTGCTGGCTATTCTACTGCAAGG
ACGAGGAGTAGGGTAGCGCAAAAATCCCTGTCCTATGCCCGAAAAAACAACAAAAGAATCCTGTAT
GGTCAACGACGGTTAATGTTTTTCGAGCATTGCTATACGACACTCTCACAACTCTGAGCACAACTG
TTGTTTTCGCTGCCAATGGCGCCCACCTCACGCATCACCATGCCTTCATACTTTGATCACCCAGAA
GCTAATGTTGCTGCCCAATGTGCTCCTAGACCACCACCTATGCTTCAGTTATGGCATCAGCATGTT
GAGGGTTATTGTAGTTATGCTGTGCTTCCATCTGACAGTCCTGCTCTGACTGTGGAGACTCATCAT
AATCTTGAATAGTTAAAGTAGGTTCCCCGTCTTCGCTAAACCACAGATGCATGTCTTCAAAGTCTG
GTAGAGCAGGCATGTCAGCAAAAATGTCCCCAGATGAACCTTGTGTGTTGAGGTTGTCCGAGGTCG
TTTGAGTGTCGATGTCCATGGGCATGTTAAGTGCAGCACTAGAGATTGGTTGTGCGGTGGCCGACA
AAAATGCTTCATCTGCTATTACTTGGCTAGAAGTTTCAGGGACAGGAGGCCGATACTGAATGATTT
CGGCCCCTGCGCCAGAAGTCTCATGATCAGTTACTGGACCCTGCTCTAGAGCAGGGAACCTCCTTT
TCTTGTTTCCATCCTCATAAACGCAGTTATTCCTGCGCTGCTGCTGCTGCTGCTGCACAAGCTGGT
TGAGAAGACTAGGGTTCTGGACAACGATTGCTAGAAGTGCCATCATCTGCTTCTGGTTCTGTTCCA
TTACTTGAAGGCGCTGAATCAAACTCTGGACTTCAAGGTTAGAGCTTTGCTGGTAGAGCCTGAGAT
CCACAAGCTGCTTCATGAGAAGAGCTTTATCCCT
Metabolic Pathways
Description (loc_os03g12370.1 : 359.0) no description available & (at5g16820 : 165.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function -
Involve In -
Located In -
Expressed In -
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 330.0) & (original description: len=1340 path=[0:0-75 3:76-136 4:137-173 5:174-197 6:198-272 10:273-300 11:301-330 13:331-346 14:347-588 15:589-648 17:649-674 19:675-758 20:759-979 21:980-1014 23:1015-1339])

Ensembl Plants
Sequence Id	TRINITY_DN5870_c0_g1_i1
Heat Stress Genes	A9
New Transcript Id	TraesCS7D02G261700.2
Functional Annotation
Gene ontology	XP_020148069.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	5.23
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	8.08
Sequence	CGCTTAATAAATGTCAATGGAACATTACATTTTCGCTGGAAGTTCACAGAATGTACAGAACAGGTT GACATTTACAGAACACAACAGCATATACAGAGTGAATTTCATGTTGCTGGCTATTCTACTGCAAGG ACGAGGAGTAGGGTAGCGCAAAAATCCCTGTCCTATGCCCGAAAAAACAACAAAAGAATCCTGTAT GGTCAACGACGGTTAATGTTTTTCGAGCATTGCTATACGACACTCTCACAACTCTGAGCACAACTG TTGTTTTCGCTGCCAATGGCGCCCACCTCACGCATCACCATGCCTTCATACTTTGATCACCCAGAA GCTAATGTTGCTGCCCAATGTGCTCCTAGACCACCACCTATGCTTCAGTTATGGCATCAGCATGTT GAGGGTTATTGTAGTTATGCTGTGCTTCCATCTGACAGTCCTGCTCTGACTGTGGAGACTCATCAT AATCTTGAATAGTTAAAGTAGGTTCCCCGTCTTCGCTAAACCACAGATGCATGTCTTCAAAGTCTG GTAGAGCAGGCATGTCAGCAAAAATGTCCCCAGATGAACCTTGTGTGTTGAGGTTGTCCGAGGTCG TTTGAGTGTCGATGTCCATGGGCATGTTAAGTGCAGCACTAGAGATTGGTTGTGCGGTGGCCGACA AAAATGCTTCATCTGCTATTACTTGGCTAGAAGTTTCAGGGACAGGAGGCCGATACTGAATGATTT CGGCCCCTGCGCCAGAAGTCTCATGATCAGTTACTGGACCCTGCTCTAGAGCAGGGAACCTCCTTT TCTTGTTTCCATCCTCATAAACGCAGTTATTCCTGCGCTGCTGCTGCTGCTGCTGCACAAGCTGGT TGAGAAGACTAGGGTTCTGGACAACGATTGCTAGAAGTGCCATCATCTGCTTCTGGTTCTGTTCCA TTACTTGAAGGCGCTGAATCAAACTCTGGACTTCAAGGTTAGAGCTTTGCTGGTAGAGCCTGAGAT CCACAAGCTGCTTCATGAGAAGAGCTTTATCCCT
Metabolic Pathways
Description	(loc_os03g12370.1 : 359.0) no description available & (at5g16820 : 165.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function	-
Involve In	-
Located In	-
Expressed In	-
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 330.0) & (original description: len=1340 path=[0:0-75 3:76-136 4:137-173 5:174-197 6:198-272 10:273-300 11:301-330 13:331-346 14:347-588 15:589-648 17:649-674 19:675-758 20:759-979 21:980-1014 23:1015-1339])