HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN5870_c0_g1_i2
Heat Stress Genes A9
Ensembl Plants
New Transcript Id TraesCS7D02G261700.3
Functional Annotation
Gene ontology XP_020148069.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 1.33
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 2.06
Sequence CTGTAAGGACAAGGAGAGTAGGGTCGCGCAAAAAGTCCCTGTCCTATGCCCGAAAAACAACAAAAG
AATCCTGTATAGTCAACGACAGTTAATGTCTTTCGAGCATTTGCTATATGACACTCTGATGACTCT
GAGCACAGATGCCGTTTTCACTGCCAATGGCGCCCACCTCACGCATCATCATGCCTCCACATTTTG
ATCACCCAGAAGCTAAAGTAATGTTGCTGCCCGATGTGCTCCTAGACCACCACCTATGCTTCAGTT
ATGGCATCAGCATGTTGAGGGTTATTGTAGTTATGCTGTGCTTCCATCTGACAGTCCTGCTCTGAC
TGTGGAGACTCATCATAATCTTGAATAGTTAAAGTAGGTTCCCCGTCTTCGCTAAACCACAGATGC
ATGTCTTCAAAGTCTGGTAGAGCAGGCATGTCAGCAAAAATGTCCCCAGATGAACCTTGTGTGTTG
AGGTTGTCCGACGTCGTTTGAGTGTCAATGTCCATGGGCATGTTAAGTGCGGGACTTGAGATTGGT
TGTGTGGTGGCCGACAAAAATGCTTCATCTGGTATTACTGGGCTAGAAGTTTCAGGGGCAGGAGGC
CGATACTGAATAATTTCGGTCCCTGCGCCAGAAGTCCCGTAATCAGTTCCTGGACCCTGCTCTAGA
GCAGGGAACCTCCTTTTCTTGTTTCCATCCTCATAAACGCAGTTATTCCTGCGCTGCTGCTGCTGC
TGCTGCACAAGCTGGTTGAGAAGACTAGGGTTCTGGACAACGATTGCTAGAAGTGCCATCATCTGC
TTCTGGTTCTGTTCCATTACTTGAAGGCGCTGAATCAAACTCTGGACTTCAAGGTTAGAGCTTTGC
TGGTAGAGCCTGAGATCCACAAGCTGCTTCATGAGAAGAGCTTTATCCCTCTTAAGGGTTTCCACC
TCCTTTACAAGCCCGCCATATCTTCCTATTTCAATATTTTCAGTACCAGGTGCAGCTTTGACAGGT
GCCTTCTCCAACTCACGACCTGCTTCCTGAGGTC
Metabolic Pathways
Description (loc_os03g12370.1 : 354.0) no description available & (at5g16820 : 162.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function -
Involve In -
Located In -
Expressed In -
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 324.0) & (original description: len=1224 path=[1:0-51 5:52-75 7:76-106 9:107-151 10:152-179 12:180-230 14:231-472 16:473-532 17:533-558 18:559-642 20:643-863 21:864-898 23:899-1223])

Ensembl Plants
Sequence Id	TRINITY_DN5870_c0_g1_i2
Heat Stress Genes	A9
New Transcript Id	TraesCS7D02G261700.3
Functional Annotation
Gene ontology	XP_020148069.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	1.33
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	2.06
Sequence	CTGTAAGGACAAGGAGAGTAGGGTCGCGCAAAAAGTCCCTGTCCTATGCCCGAAAAACAACAAAAG AATCCTGTATAGTCAACGACAGTTAATGTCTTTCGAGCATTTGCTATATGACACTCTGATGACTCT GAGCACAGATGCCGTTTTCACTGCCAATGGCGCCCACCTCACGCATCATCATGCCTCCACATTTTG ATCACCCAGAAGCTAAAGTAATGTTGCTGCCCGATGTGCTCCTAGACCACCACCTATGCTTCAGTT ATGGCATCAGCATGTTGAGGGTTATTGTAGTTATGCTGTGCTTCCATCTGACAGTCCTGCTCTGAC TGTGGAGACTCATCATAATCTTGAATAGTTAAAGTAGGTTCCCCGTCTTCGCTAAACCACAGATGC ATGTCTTCAAAGTCTGGTAGAGCAGGCATGTCAGCAAAAATGTCCCCAGATGAACCTTGTGTGTTG AGGTTGTCCGACGTCGTTTGAGTGTCAATGTCCATGGGCATGTTAAGTGCGGGACTTGAGATTGGT TGTGTGGTGGCCGACAAAAATGCTTCATCTGGTATTACTGGGCTAGAAGTTTCAGGGGCAGGAGGC CGATACTGAATAATTTCGGTCCCTGCGCCAGAAGTCCCGTAATCAGTTCCTGGACCCTGCTCTAGA GCAGGGAACCTCCTTTTCTTGTTTCCATCCTCATAAACGCAGTTATTCCTGCGCTGCTGCTGCTGC TGCTGCACAAGCTGGTTGAGAAGACTAGGGTTCTGGACAACGATTGCTAGAAGTGCCATCATCTGC TTCTGGTTCTGTTCCATTACTTGAAGGCGCTGAATCAAACTCTGGACTTCAAGGTTAGAGCTTTGC TGGTAGAGCCTGAGATCCACAAGCTGCTTCATGAGAAGAGCTTTATCCCTCTTAAGGGTTTCCACC TCCTTTACAAGCCCGCCATATCTTCCTATTTCAATATTTTCAGTACCAGGTGCAGCTTTGACAGGT GCCTTCTCCAACTCACGACCTGCTTCCTGAGGTC
Metabolic Pathways
Description	(loc_os03g12370.1 : 354.0) no description available & (at5g16820 : 162.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function	-
Involve In	-
Located In	-
Expressed In	-
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 324.0) & (original description: len=1224 path=[1:0-51 5:52-75 7:76-106 9:107-151 10:152-179 12:180-230 14:231-472 16:473-532 17:533-558 18:559-642 20:643-863 21:864-898 23:899-1223])