HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)



Sequence IdTRINITY_DN5870_c0_g1_i6
Heat Stress GenesA9
Ensembl Plants
New Transcript IdTraesCS7D02G261700.4
Functional Annotation
Gene ontologyXP_020148069.1
Protein family Detail
TypeDomain
Transcripts Per Million
TPM2.51
Fragments Per Kilobase of transcript per Million mapped reads
FPKM3.87
SequenceCTGTAAGGACAAGGAGAGTAGGGTCGCGCAAAAAGTCCCTGTCCTATGCCCGAAAAACAACAAAAG
AATCCTGTATAGTCAACGACAGTTAATGTCTTTCGAGCATTTGCTATATGACACTCTGATGACTCT
GAGCACAGATGCCGTTTTCACTGCCAATGGCGCCCACCTCACGCATCATCATGCCTCCACATTTTG
ATCACCCAGAAGCTAAAGTAATGTTGCTGCCCGATGTGCTCCTAGACCACCACCTATGCTTCAGTT
ATGGCATCAGCATGTTGAGGGTTATTGTAGTTATGCTGTGCTTCCATCTGACAGTCCTGCTCTGAC
TGTGGAGACTCATCATAATCTTGAATAGTTAAAGTAGGTTCCCCGTCTTCGCTAAACCACAGATGC
ATGTCTTCAAAGTCTGGTAGAGCAGGCATGTCAGCAAAAATGTCCCCAGATGAACCTTGTGTGTTG
AGGTTGTCCGAGGTCGTTTGAGTGTCGATGTCCATGGGCATGTTAAGTGCAGCACTAGAGATTGGT
TGTGCGGTGGCCGACAAAAATGCTTCATCTGCTATTACTTGGCTAGAAGTTTCAGGGACAGGAGGC
CGATACTGAATGATTTCGGCCCCTGCGCCAGAAGTCTCATGATCAGTTACTGGACCCTGCTCTAGA
GCAGGGAACCTCCTTTTCTTGTTTCCATCCTCATAAACGCAGTTATTCCTGCGCTGCTGCTGCTGC
TGCTGCACAAGCTGGTTGAGAAGACTAGGGTTCTGGACAACGATTGCTAGAAGTGCCATCATCTGC
TTCTGGTTCTGTTCCATTACTTGAAGGCGCTGAATCAAACTCTGGACTTCAAGGTTAGAGCTTTGC
TGGTAGAGCCTGAGATCCACAAGCTGCTTCATGAGAAGAGCTTTATCCCTCTTAAGGGTTTCCACC
TCCTTTACAAGCCCGCCATATCTTCCTATTTCAATATTTTCAGTACCAGGTGCAGCTTTGACAGGT
GCCTTCTCCAACTCACGACCTGCTTCCTGAGGTC
Metabolic Pathways
Description(loc_os03g12370.1 : 359.0) no description available & (at5g16820 : 165.0) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.; heat shock factor 3 (HSF3);
Function-
Involve In-
Located In-
Expressed In-
Expressed_During-
Domains/InterproCONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best ArabiophosystemicsBEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). & (reliability: 330.0) & (original description: len=1224 path=[1:0-51 5:52-75 7:76-106 9:107-151 10:152-179 12:180-230 14:231-472 15:473-532 17:533-558 19:559-642 20:643-863 21:864-898 23:899-1223])