HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN5914_c0_g1_i3
Heat Stress Genes A6B
Ensembl Plants
New Transcript Id TraesCS7A02G540200.5
Functional Annotation
Gene ontology AHZ44766.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 6.35
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 9.81
Sequence GTTTTTATGTGATACATATATTTCGTTAGTCAAATTGACGACCTAACCACAAAGATGCCTATAAAT
CCAGACAGGAGTACAACTTTAGCCCACAAAAGACTGTCTTACACGGTATAGACCAGAACATGTGCA
TTGAACACCTAGCAGTGCCCGCTTTACAGACTGACGAGGCTATATCGCCTGAAACAACAAACAGAT
CTCTAAGGTCAATCGAAGGAAACACTGATAAATCACATAATCCCAGGGAAGTCTAGGGTTTAGACG
ACTCGAAGACCAGGACACGGTGGGGAATCACTGCCGACACTTGCATAGGCACCACAGGGTGGATAG
ATGAAACATGAAGAAAGTCGCGGCAATTTGATAGAATGGAATGGAACTAGGTTGAGAGGGTTGGAC
TATTTGGGATGAAATAGCCCATCTTCTCAGACAGCACATCCATGCCGTCGGCGTTAACCGGCTCGT
CGTTCTCACCGCTGAGCCCTTTGTTCAGCAGCTCCTCCCAGAAATTATCATGGAACAACCCCGGGA
CTCTGTTCTGCTGCGCTTCACATGTACCGAGACCAAAATCCTGTGGCTCTGTTACGCCGTTAGCGT
CGATGCCTGAGCCGTTGAGATCAGCTGGAATCCCATCAACAAGGAGTTCCACTGAACATTCCAGGT
CAGGTGGAATCCCGTCATCAAGGAGTGCCACTGAACCTTCCAGATCTGGTGGGATCCCATCAGCAA
GGAGTTCCACGGGCACCGGCACTGACCCCTCGGCAAGAAGTTCCACTGACCCATGAGAATCAAACA
CAACAGGCGACTCTTGCTCCAGGTTGCTGCTACTAGCGCCCACGGCATAAGCTTCAGGTCCACCGT
CGATGCGGCGCCTCCTTTTCTTCGAGATAGCGTCATGGAGCTCCTTCCTCATCCCATTCTTGGCAA
TCAGTTGCTTCAAGAATTCAGGGTTCCGCAAGATACGTGCCATGAATGAAGTCATCTGCTGCTGCT
TCTGCTCGGTTCCACGTAGCCTATCCTCCATGGC
Metabolic Pathways
Description (loc_os07g08140.1 : 495.0) no description available & (at3g22830 : 303.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: regulation of transcription, DNA-dependent;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: root;
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 562.0) & (original description: len=1507 path=[1:0-117 4:118-177 7:178-289 8:290-338 10:339-368 11:369-444 12:445-478 14:479-518 16:519-563 17:564-590 19:591-618 20:619-645 21:646-677 23:678-702 24:703-748 26:749-799 27:800-834 29:835-1083 31:1084-1111 32:1112-1173 34:1174-1216 35:1217-1251 36:1252-1261 38:1262-1264 39:1265-1302 40:1303-1506])

Ensembl Plants
Sequence Id	TRINITY_DN5914_c0_g1_i3
Heat Stress Genes	A6B
New Transcript Id	TraesCS7A02G540200.5
Functional Annotation
Gene ontology	AHZ44766.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	6.35
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	9.81
Sequence	GTTTTTATGTGATACATATATTTCGTTAGTCAAATTGACGACCTAACCACAAAGATGCCTATAAAT CCAGACAGGAGTACAACTTTAGCCCACAAAAGACTGTCTTACACGGTATAGACCAGAACATGTGCA TTGAACACCTAGCAGTGCCCGCTTTACAGACTGACGAGGCTATATCGCCTGAAACAACAAACAGAT CTCTAAGGTCAATCGAAGGAAACACTGATAAATCACATAATCCCAGGGAAGTCTAGGGTTTAGACG ACTCGAAGACCAGGACACGGTGGGGAATCACTGCCGACACTTGCATAGGCACCACAGGGTGGATAG ATGAAACATGAAGAAAGTCGCGGCAATTTGATAGAATGGAATGGAACTAGGTTGAGAGGGTTGGAC TATTTGGGATGAAATAGCCCATCTTCTCAGACAGCACATCCATGCCGTCGGCGTTAACCGGCTCGT CGTTCTCACCGCTGAGCCCTTTGTTCAGCAGCTCCTCCCAGAAATTATCATGGAACAACCCCGGGA CTCTGTTCTGCTGCGCTTCACATGTACCGAGACCAAAATCCTGTGGCTCTGTTACGCCGTTAGCGT CGATGCCTGAGCCGTTGAGATCAGCTGGAATCCCATCAACAAGGAGTTCCACTGAACATTCCAGGT CAGGTGGAATCCCGTCATCAAGGAGTGCCACTGAACCTTCCAGATCTGGTGGGATCCCATCAGCAA GGAGTTCCACGGGCACCGGCACTGACCCCTCGGCAAGAAGTTCCACTGACCCATGAGAATCAAACA CAACAGGCGACTCTTGCTCCAGGTTGCTGCTACTAGCGCCCACGGCATAAGCTTCAGGTCCACCGT CGATGCGGCGCCTCCTTTTCTTCGAGATAGCGTCATGGAGCTCCTTCCTCATCCCATTCTTGGCAA TCAGTTGCTTCAAGAATTCAGGGTTCCGCAAGATACGTGCCATGAATGAAGTCATCTGCTGCTGCT TCTGCTCGGTTCCACGTAGCCTATCCTCCATGGC
Metabolic Pathways
Description	(loc_os07g08140.1 : 495.0) no description available & (at3g22830 : 303.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: regulation of transcription, DNA-dependent;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: root;
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 562.0) & (original description: len=1507 path=[1:0-117 4:118-177 7:178-289 8:290-338 10:339-368 11:369-444 12:445-478 14:479-518 16:519-563 17:564-590 19:591-618 20:619-645 21:646-677 23:678-702 24:703-748 26:749-799 27:800-834 29:835-1083 31:1084-1111 32:1112-1173 34:1174-1216 35:1217-1251 36:1252-1261 38:1262-1264 39:1265-1302 40:1303-1506])