HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

Home

Sequence Id TRINITY_DN5914_c0_g1_i4
Heat Stress Genes A2e
Ensembl Plants
New Transcript Id TraesCS7D02G367700.1
Functional Annotation
Gene ontology XP_020187328.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 10.78
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 16.65
Sequence GTCAGGAATTAATGCTTTTTACTTCTGATAAACTTTCTTAATGTGAGCAACTTTAGATACCAATTC
CTTAGTGAGGAATACAGGATACAGTACAAAGCCTCCCTAAGGAAGCAACAAGCACAGTTGCCTAAA
AGAAGATGGTAGCAGGCACATTACACATAGGCACAACATGATACTACTGTACATCGATATCATCCA
GATACAATCACTGCACATATACGTGCTATATACTGGGTACTATCATATTTATTCTCATATGGATGA
CATTAGCTATCAGAAAACTAGGCATACAGCCCAATCCGACTAAAATCTTTGCACAGCAGACAGTGG
CAAGCAACCCAACTAGAATCCTCCCAGAAGTTGAACTAAACACGGCATTGACGAAAATAAGATCGA
CAATAAGATAATAGGGTGGCATCATCACCAAAGGCAGCAGTGATCTACTCGACTGACTGATCATGG
CCGAAGCAGACATATATACATATATAACAACAGGCATTCTGGTAAGGATTCTCAGGGCTGCTCGGC
AATAGAATGCGATGGATTATTGTCCGGAATTCGCGTCCTTTGAGTCGAGCTAGTCCAGCTTCTCAG
CCAACAAGTTCATGTCATCTGGAACCACCAGGTTGCTGGCCTCCTCGCCGAGCCCCCCTTCATGCA
GCAGGTCCTCCCAGAAATCATCATTTAGCTCTCCACTGGGCCTGCCTCTCAGTTGCTCCGAACGGC
TGGAAGCGACACTCTGCTGCACCTCAGCTCCCTTTGTATCGACGGACGAGCTTTCAAGATCGGATA
TGACACCGTTCACGAGCGAGTCCACTGGCTCCTGCTGCTCAAACATTACCTGTGACCCTTGCTCCA
GGGTAGAGCCAGTGCCCATGCTATCGACAGCTTCAGGTCCCTGGTCGATGCGGCGCCGTCTTTTAT
TTGAGATGGCATCTTCGAGCTCCTTCCGCATCTCACTCTGGGAGAGCAGATGGTGTATGAACATGG
GGTTCTGCATGACTCGCGCCAAGAATGACATCAT
Metabolic Pathways
Description (loc_os03g58160.1 : 459.0) no description available & (at3g22830 : 288.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: regulation of transcription, DNA-dependent;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: root;
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 576.0) & (original description: len=1522 path=[0:0-591 6:592-1303 38:1304-1306 39:1307-1344 41:1345-1521])

Ensembl Plants
Sequence Id	TRINITY_DN5914_c0_g1_i4
Heat Stress Genes	A2e
New Transcript Id	TraesCS7D02G367700.1
Functional Annotation
Gene ontology	XP_020187328.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	10.78
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	16.65
Sequence	GTCAGGAATTAATGCTTTTTACTTCTGATAAACTTTCTTAATGTGAGCAACTTTAGATACCAATTC CTTAGTGAGGAATACAGGATACAGTACAAAGCCTCCCTAAGGAAGCAACAAGCACAGTTGCCTAAA AGAAGATGGTAGCAGGCACATTACACATAGGCACAACATGATACTACTGTACATCGATATCATCCA GATACAATCACTGCACATATACGTGCTATATACTGGGTACTATCATATTTATTCTCATATGGATGA CATTAGCTATCAGAAAACTAGGCATACAGCCCAATCCGACTAAAATCTTTGCACAGCAGACAGTGG CAAGCAACCCAACTAGAATCCTCCCAGAAGTTGAACTAAACACGGCATTGACGAAAATAAGATCGA CAATAAGATAATAGGGTGGCATCATCACCAAAGGCAGCAGTGATCTACTCGACTGACTGATCATGG CCGAAGCAGACATATATACATATATAACAACAGGCATTCTGGTAAGGATTCTCAGGGCTGCTCGGC AATAGAATGCGATGGATTATTGTCCGGAATTCGCGTCCTTTGAGTCGAGCTAGTCCAGCTTCTCAG CCAACAAGTTCATGTCATCTGGAACCACCAGGTTGCTGGCCTCCTCGCCGAGCCCCCCTTCATGCA GCAGGTCCTCCCAGAAATCATCATTTAGCTCTCCACTGGGCCTGCCTCTCAGTTGCTCCGAACGGC TGGAAGCGACACTCTGCTGCACCTCAGCTCCCTTTGTATCGACGGACGAGCTTTCAAGATCGGATA TGACACCGTTCACGAGCGAGTCCACTGGCTCCTGCTGCTCAAACATTACCTGTGACCCTTGCTCCA GGGTAGAGCCAGTGCCCATGCTATCGACAGCTTCAGGTCCCTGGTCGATGCGGCGCCGTCTTTTAT TTGAGATGGCATCTTCGAGCTCCTTCCGCATCTCACTCTGGGAGAGCAGATGGTGTATGAACATGG GGTTCTGCATGACTCGCGCCAAGAATGACATCAT
Metabolic Pathways
Description	(loc_os03g58160.1 : 459.0) no description available & (at3g22830 : 288.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: regulation of transcription, DNA-dependent;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: root;
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 576.0) & (original description: len=1522 path=[0:0-591 6:592-1303 38:1304-1306 39:1307-1344 41:1345-1521])