HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN6304_c0_g1_i1
Heat Stress Genes A6B
Ensembl Plants
New Transcript Id TraesCS7D02G367700.1
Functional Annotation
Gene ontology AHZ44769.1
Protein family Detail
Type Domain
Transcripts Per Million
TPM 16.08
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 24.83
Sequence CTTAGCTTCGAGTTCAATAATAAGACCACTAATCAATAGTACCTTGCAAAGGTTATCAACATTTAT
TATCTCAATATAACAGAGGTTCCAGCATACACTACCAATCATCACACAGGACACAGGCCCTAAAAG
TAAGGTAAATTGGCAAATGGACAGCAGCAGGAGAAATGGGTAAACCCACACCCAGATGCCAACGGC
TGACTACAGACCAGACTTTCACAACAAAACTTCACCCAACGAGTATATACAGTAACACACTTCCAC
AGCTACTGCTGCTGAACACCAGCTCAGAACAACCGAATGTCGACTACCTGGACCATCTTCTTCAGA
GTTACGAGTTTAGGTAACCATTCAATACACGTCATGGGTCTCCATCAAGCGACGCAGCAATTAGTC
TTCAGCTTCTACTCTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCA
GATAGCCAGTCATGTTGCCACCAATCAACTAAATCAGATTGTTCAAGATGATCTGCAATAGTAGTA
CTGAAGAAGCAATGTTTGTTGGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAG
AACTCAGATACCCCAACTGCTGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTG
ACAGCCCAGACCCGTCTCCGTCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGA
TGTCCAGCTGCCCATTAGCTTCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAA
TGTTCTGCGCTAAATTCTCCATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGA
ACTGTGAATCAAGTTGCTCGCTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTA
TAGGCCGCCTTCTTTTCTTCGAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTA
ATTGTTGGAAGAAGTGTGGGTTACGCATTGCTCT
Metabolic Pathways
Description (loc_os10g28340.3 : 449.0) no description available & (at3g22830 : 270.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: regulation of transcription, DNA-dependent;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: root;
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 540.0) & (original description: len=1483 path=[0:0-289 3:290-346 4:347-383 5:384-496 7:497-1353 21:1354-1482])

Ensembl Plants
Sequence Id	TRINITY_DN6304_c0_g1_i1
Heat Stress Genes	A6B
New Transcript Id	TraesCS7D02G367700.1
Functional Annotation
Gene ontology	AHZ44769.1
Protein family Detail
Type	Domain
Transcripts Per Million
TPM	16.08
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	24.83
Sequence	CTTAGCTTCGAGTTCAATAATAAGACCACTAATCAATAGTACCTTGCAAAGGTTATCAACATTTAT TATCTCAATATAACAGAGGTTCCAGCATACACTACCAATCATCACACAGGACACAGGCCCTAAAAG TAAGGTAAATTGGCAAATGGACAGCAGCAGGAGAAATGGGTAAACCCACACCCAGATGCCAACGGC TGACTACAGACCAGACTTTCACAACAAAACTTCACCCAACGAGTATATACAGTAACACACTTCCAC AGCTACTGCTGCTGAACACCAGCTCAGAACAACCGAATGTCGACTACCTGGACCATCTTCTTCAGA GTTACGAGTTTAGGTAACCATTCAATACACGTCATGGGTCTCCATCAAGCGACGCAGCAATTAGTC TTCAGCTTCTACTCTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCA GATAGCCAGTCATGTTGCCACCAATCAACTAAATCAGATTGTTCAAGATGATCTGCAATAGTAGTA CTGAAGAAGCAATGTTTGTTGGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAG AACTCAGATACCCCAACTGCTGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTG ACAGCCCAGACCCGTCTCCGTCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGA TGTCCAGCTGCCCATTAGCTTCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAA TGTTCTGCGCTAAATTCTCCATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGA ACTGTGAATCAAGTTGCTCGCTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTA TAGGCCGCCTTCTTTTCTTCGAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTA ATTGTTGGAAGAAGTGTGGGTTACGCATTGCTCT
Metabolic Pathways
Description	(loc_os10g28340.3 : 449.0) no description available & (at3g22830 : 270.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: regulation of transcription, DNA-dependent;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: root;
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 540.0) & (original description: len=1483 path=[0:0-289 3:290-346 4:347-383 5:384-496 7:497-1353 21:1354-1482])