HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN6304_c0_g1_i11
Heat Stress Genes A6B
Ensembl Plants
New Transcript Id TraesCS5D02G445100.1
Functional Annotation
Gene ontology AHZ44769.1
Protein family Detail
Type -
Transcripts Per Million
TPM 4.06
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 6.28
Sequence GACATGAGTTATGCAAGTGGAGAGAGGCAGGCGAGTACTTACAGCAATTAGTCTTCAGCTTCTACT
CTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCAGATAGCCAGTCAT
GTTGCCACCAATCAACTAAATCTGGTTAATGAACAAACGAGAAAGCTTCAGTATAGCAAAAGAGGG
AAAGCCATAAACCAGACCAATCGAGAATGAAAACAGGCATGTAGATTTCAACCATGTTCTCAAAGA
TCCAACCACTACACTAACTCTCACTCCTACAGACTTATGGCAACACAAATCATACATGTGTCACTG
CGTTAATTACCATGTTACCATATTTTCACTACACTTATTAGTAAGATTATGATATTTGTGTTATTG
AACACGAAATATACCAGATTGTTCAAGATGATCTGCAATAGTAGTACTGAAGAAGCAATGTTTGTT
GGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAGAACTCAGATACCCCAACTGC
TGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTGACAGCCCAGACCCGTCTCCG
TCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGATGTCCAGCTGCCCATTAGCT
TCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAATGTTCTGCGCTAAATTCTCC
ATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGAACTGTGAATCAAGTTGCTCG
CTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTATAGGCCGCCTTCTTTTCTTC
GAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTAATTGTTGGAAGAAGTGTGGG
TTACGCATTGCTCTTGCCAAGAACCCCATCATCTGGGCCTGTCTCTGTTCAGCAGCTCGTAGCCTG
CCTTCCATGGCTTGCACGTTATCCTTAGTAGCTT
Metabolic Pathways
Description (loc_os10g28340.4 : 367.0) no description available & (at3g22830 : 202.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: regulation of transcription, DNA-dependent;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: root;
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 404.0) & (original description: len=1268 path=[1:0-40 5:41-153 6:154-410 7:411-1267])

Ensembl Plants
Sequence Id	TRINITY_DN6304_c0_g1_i11
Heat Stress Genes	A6B
New Transcript Id	TraesCS5D02G445100.1
Functional Annotation
Gene ontology	AHZ44769.1
Protein family Detail
Type	-
Transcripts Per Million
TPM	4.06
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	6.28
Sequence	GACATGAGTTATGCAAGTGGAGAGAGGCAGGCGAGTACTTACAGCAATTAGTCTTCAGCTTCTACT CTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCAGATAGCCAGTCAT GTTGCCACCAATCAACTAAATCTGGTTAATGAACAAACGAGAAAGCTTCAGTATAGCAAAAGAGGG AAAGCCATAAACCAGACCAATCGAGAATGAAAACAGGCATGTAGATTTCAACCATGTTCTCAAAGA TCCAACCACTACACTAACTCTCACTCCTACAGACTTATGGCAACACAAATCATACATGTGTCACTG CGTTAATTACCATGTTACCATATTTTCACTACACTTATTAGTAAGATTATGATATTTGTGTTATTG AACACGAAATATACCAGATTGTTCAAGATGATCTGCAATAGTAGTACTGAAGAAGCAATGTTTGTT GGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAGAACTCAGATACCCCAACTGC TGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTGACAGCCCAGACCCGTCTCCG TCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGATGTCCAGCTGCCCATTAGCT TCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAATGTTCTGCGCTAAATTCTCC ATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGAACTGTGAATCAAGTTGCTCG CTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTATAGGCCGCCTTCTTTTCTTC GAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTAATTGTTGGAAGAAGTGTGGG TTACGCATTGCTCTTGCCAAGAACCCCATCATCTGGGCCTGTCTCTGTTCAGCAGCTCGTAGCCTG CCTTCCATGGCTTGCACGTTATCCTTAGTAGCTT
Metabolic Pathways
Description	(loc_os10g28340.4 : 367.0) no description available & (at3g22830 : 202.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: regulation of transcription, DNA-dependent;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: root;
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 404.0) & (original description: len=1268 path=[1:0-40 5:41-153 6:154-410 7:411-1267])