HEAT STRESS GENES DATABASE

Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)

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Sequence Id TRINITY_DN6304_c0_g1_i4
Heat Stress Genes A6B
Ensembl Plants
New Transcript Id TraesCSU02G127300.1
Functional Annotation
Gene ontology AHZ44769.1
Protein family Detail
Type -
Transcripts Per Million
TPM 2.24
Fragments Per Kilobase of transcript per Million mapped reads
FPKM 3.46
Sequence CTTAGCTTCGAGTTCAATAATAAGACCACTAATCAATAGTACCTTGCAAAGGTTATCAACATTTAT
TATCTCAATATAACAGAGGTTCCAGCATACACTACCAATCATCACACAGGACACAGGCCCTAAAAG
TAAGGTAAATTGGCAAATGGACAGCAGCAGGAGAAATGGGTAAACCCACACCCAGATGCCAACGGC
TGACTACAGACCAGACTTTCACAACAAAACTTCACCCAACGAGTATATACAGTAACACACTTCCAC
AGCTACTGCTGCTGAACACCAGCTCAGAACAACCGAATGTCGACTACCTGGACCATCTTCTTCAGA
GTTACGAGTTTAGGTAACCATTCAATACACGTCATGGGTCTCCATCAAGCGACGCAGCAATTAGTC
TTCAGCTTCTACTCTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCA
GATAGCCAGTCATGTTGCCACCAATCAACTAAATCAGATTGTTCAAGATGATCTGCAATAGTAGTA
CTGAAGAAGCAATGTTTGTTGGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAG
AACTCAGATACCCCAACTGCTGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTG
ACAGCCCAGACCCGTCTCCGTCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGA
TGTCCAGCTGCCCATTAGCTTCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAA
TGTTCTGCGCTAAATTCTCCATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGA
ACTGTGAATCAAGTTGCTCGCTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTA
TAGGCCGCCTTCTTTTCTTCGAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTA
ATTGTTGGAAGAAGTGTGGGTTACGCATTGCTCT
Metabolic Pathways
Description (loc_os10g28340.3 : 370.0) no description available & (at3g22830 : 204.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In INVOLVED IN: regulation of transcription, DNA-dependent;
Located In LOCATED IN: nucleus;
Expressed In EXPRESSED IN: root;
Expressed_During -
Domains/Interpro CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 408.0) & (original description: len=2316 path=[0:0-289 3:290-346 4:347-383 5:384-496 7:497-1353 8:1354-1428 10:1429-1548 11:1549-1737 13:1738-1816 14:1817-1866 15:1867-1921 17:1922-2036 18:2037-2063 20:2064-2186 21:2187-2315])

Ensembl Plants
Sequence Id	TRINITY_DN6304_c0_g1_i4
Heat Stress Genes	A6B
New Transcript Id	TraesCSU02G127300.1
Functional Annotation
Gene ontology	AHZ44769.1
Protein family Detail
Type	-
Transcripts Per Million
TPM	2.24
Fragments Per Kilobase of transcript per Million mapped reads
FPKM	3.46
Sequence	CTTAGCTTCGAGTTCAATAATAAGACCACTAATCAATAGTACCTTGCAAAGGTTATCAACATTTAT TATCTCAATATAACAGAGGTTCCAGCATACACTACCAATCATCACACAGGACACAGGCCCTAAAAG TAAGGTAAATTGGCAAATGGACAGCAGCAGGAGAAATGGGTAAACCCACACCCAGATGCCAACGGC TGACTACAGACCAGACTTTCACAACAAAACTTCACCCAACGAGTATATACAGTAACACACTTCCAC AGCTACTGCTGCTGAACACCAGCTCAGAACAACCGAATGTCGACTACCTGGACCATCTTCTTCAGA GTTACGAGTTTAGGTAACCATTCAATACACGTCATGGGTCTCCATCAAGCGACGCAGCAATTAGTC TTCAGCTTCTACTCTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCA GATAGCCAGTCATGTTGCCACCAATCAACTAAATCAGATTGTTCAAGATGATCTGCAATAGTAGTA CTGAAGAAGCAATGTTTGTTGGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAG AACTCAGATACCCCAACTGCTGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTG ACAGCCCAGACCCGTCTCCGTCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGA TGTCCAGCTGCCCATTAGCTTCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAA TGTTCTGCGCTAAATTCTCCATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGA ACTGTGAATCAAGTTGCTCGCTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTA TAGGCCGCCTTCTTTTCTTCGAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTA ATTGTTGGAAGAAGTGTGGGTTACGCATTGCTCT
Metabolic Pathways
Description	(loc_os10g28340.3 : 370.0) no description available & (at3g22830 : 204.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B);
Function	FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity;
Involve In	INVOLVED IN: regulation of transcription, DNA-dependent;
Located In	LOCATED IN: nucleus;
Expressed In	EXPRESSED IN: root;
Expressed_During	-
Domains/Interpro	CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232);
Best Arabiophosystemics	BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 408.0) & (original description: len=2316 path=[0:0-289 3:290-346 4:347-383 5:384-496 7:497-1353 8:1354-1428 10:1429-1548 11:1549-1737 13:1738-1816 14:1817-1866 15:1867-1921 17:1922-2036 18:2037-2063 20:2064-2186 21:2187-2315])