Responsive genes in Aegilops Speltoides (accession pau 3809) and Triticum aestivum (accession pau C273)
Sequence Id | TRINITY_DN6304_c0_g1_i9 |
Heat Stress Genes | A6B |
Ensembl Plants | |
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New Transcript Id | TraesCSU02G127200.1 |
Functional Annotation | |
Gene ontology | AHZ44769.1 |
Protein family Detail | |
Type | - |
Transcripts Per Million | |
TPM | 0.21 |
Fragments Per Kilobase of transcript per Million mapped reads | |
FPKM | 0.32 |
Sequence | CTTAGCTTCGAGTTCAATAATAAGACCACTAATCAATAGTACCTTGCAAAGGTTATCAACATTTAT TATCTCAATATAACAGAGGTTCCAGCATACACTACCAATCATCACACAGGACACAGGCCCTAAAAG TAAGGTAAATTGGCAAATGGACAGCAGCAGGAGAAATGGGTAAACCCACACCCAGATGCCAACGGC TGACTACAGACCAGACTTTCACAACAAAACTTCACCCAACGAGTATATACAGTAACACACTTCCAC AGCTACTGCTGCTGAACACCAGCTCAGAACAACCGAATGTCGACTACCTGGACCATCTTCTTCAGA GTTACGAGTTTAGGTAACCATTCAATACACGTCATGGGTCTCCATCAAGCGACGCAGCAATTAGTC TTCAGCTTCTACTCTCTACCCAGAGGTGCCATCAACACGGTCCAATCTCCGGTATGGAACACCTCA GATAGCCAGTCATGTTGCCACCAATCAACTAAATCAGATTGTTCAAGATGATCTGCAATAGTAGTA CTGAAGAAGCAATGTTTGTTGGTTGAAGTGAACCACTGTGAACAAAACTCTACTGCGGGCTAGTAG AACTCAGATACCCCAACTGCTGACCCAGTTCATCGATATCTTCAGGTCTCCTTCCCTCCAACTCTG ACAGCCCAGACCCGTCTCCGTCTCCAAAATCATCAGAAAATAGCTCTGCCCAGAAATCGCTGTTGA TGTCCAGCTGCCCATTAGCTTCATCCTTCTTCTCCTCGTCTGTTTTGCCCTGCCCAAGCTCCTGAA TGTTCTGCGCTAAATTCTCCATCCCGTTCATTCCAGGTTCACTGAGGACACCAGAATCAAACAGGA ACTGTGAATCAAGTTGCTCGCTCTGACTTGTTGTTGCCCCCAAACCATAAAATGGAGCATTGTCTA TAGGCCGCCTTCTTTTCTTCGAGATGGCATCCTCAAGCTCCTTCCTCTTATCTTGCTTCTGGACTA ATTGTTGGAAGAAGTGTGGGTTACGCATTGCTCT |
Metabolic Pathways | |
Description | (loc_os10g28340.3 : 370.0) no description available & (at3g22830 : 204.0) member of Heat Stress Transcription Factor (Hsf) family; heat shock transcription factor A6B (HSFA6B); |
Function | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; |
Involve In | INVOLVED IN: regulation of transcription, DNA-dependent; |
Located In | LOCATED IN: nucleus; |
Expressed In | EXPRESSED IN: root; |
Expressed_During | - |
Domains/Interpro | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); |
Best Arabiophosystemics | BEST Arabidopsis thaliana protein match is: heat shock transcription factor A2 (TAIR:AT2G26150.1); Has 2517 Blast hits to 2494 proteins in 242 species: Archae - 0; Bacteria - 17; Metazoa - 509; Fungi - 485; Plants - 797; Viruses - 4; Other Eukaryotes - 705 (source: NCBI BLink). & (reliability: 408.0) & (original description: len=2414 path=[0:0-289 3:290-346 4:347-383 5:384-496 7:497-1353 8:1354-1428 10:1429-1548 11:1549-1737 13:1738-1816 14:1817-1866 15:1867-1921 17:1922-2036 19:2037-2161 20:2162-2284 21:2285-2413]) |